View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19865_high_10 (Length: 266)

Name: NF19865_high_10
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19865_high_10
NF19865_high_10
[»] chr2 (13 HSPs)
chr2 (1-166)||(26252206-26252371)
chr2 (167-243)||(13559574-13559650)
chr2 (168-256)||(2916377-2916465)
chr2 (171-250)||(44594504-44594583)
chr2 (167-252)||(11533709-11533794)
chr2 (175-255)||(40987907-40987987)
chr2 (169-256)||(16973064-16973151)
chr2 (167-256)||(44594246-44594336)
chr2 (168-256)||(16973324-16973412)
chr2 (168-243)||(40987656-40987731)
chr2 (169-236)||(24125670-24125737)
chr2 (191-248)||(38982825-38982882)
chr2 (164-249)||(38982552-38982637)
[»] chr1 (10 HSPs)
chr1 (167-256)||(10824629-10824718)
chr1 (168-256)||(22683140-22683228)
chr1 (170-256)||(15825781-15825865)
chr1 (167-248)||(19056419-19056500)
chr1 (165-256)||(37189608-37189699)
chr1 (186-256)||(18844476-18844546)
chr1 (167-256)||(18844708-18844798)
chr1 (169-255)||(19056150-19056236)
chr1 (169-256)||(37189368-37189454)
chr1 (163-256)||(10824359-10824455)
[»] scaffold0781 (1 HSPs)
scaffold0781 (169-256)||(5295-5382)
[»] chr6 (9 HSPs)
chr6 (169-256)||(2216838-2216925)
chr6 (167-256)||(24690353-24690442)
chr6 (165-251)||(11644012-11644099)
chr6 (165-256)||(24798882-24798973)
chr6 (174-256)||(11643754-11643836)
chr6 (171-255)||(24690607-24690691)
chr6 (168-256)||(24798624-24798712)
chr6 (169-255)||(18494993-18495079)
chr6 (167-256)||(18494732-18494820)
[»] chr3 (9 HSPs)
chr3 (168-256)||(51663510-51663598)
chr3 (164-256)||(51663245-51663337)
chr3 (167-256)||(46003246-46003335)
chr3 (170-243)||(20538207-20538280)
chr3 (168-256)||(40244624-40244713)
chr3 (171-253)||(46003511-46003593)
chr3 (168-231)||(40244873-40244936)
chr3 (172-243)||(40364230-40364301)
chr3 (168-256)||(20537925-20538013)
[»] chr7 (10 HSPs)
chr7 (166-255)||(30862215-30862304)
chr7 (162-250)||(28715908-28715996)
chr7 (167-256)||(28715640-28715729)
chr7 (168-256)||(41985909-41985997)
chr7 (172-256)||(30862480-30862564)
chr7 (170-256)||(6474281-6474367)
chr7 (169-256)||(47373462-47373551)
chr7 (164-234)||(6474562-6474632)
chr7 (168-238)||(41986186-41986256)
chr7 (186-243)||(47373735-47373792)
[»] chr4 (9 HSPs)
chr4 (166-259)||(55173510-55173603)
chr4 (164-256)||(39161283-39161375)
chr4 (167-243)||(47097070-47097146)
chr4 (168-256)||(50509388-50509476)
chr4 (167-256)||(39161547-39161636)
chr4 (172-256)||(37996068-37996152)
chr4 (164-252)||(55173329-55173417)
chr4 (208-254)||(26428881-26428927)
chr4 (167-243)||(47096798-47096873)
[»] chr8 (9 HSPs)
chr8 (168-256)||(13884488-13884576)
chr8 (164-256)||(42126377-42126469)
chr8 (169-256)||(13884748-13884835)
chr8 (168-255)||(29714541-29714628)
chr8 (164-256)||(11867942-11868033)
chr8 (168-243)||(43416262-43416337)
chr8 (169-250)||(42126650-42126731)
chr8 (169-256)||(29714802-29714889)
chr8 (191-256)||(2554110-2554175)
[»] scaffold0060 (1 HSPs)
scaffold0060 (168-256)||(22965-23053)
[»] chr5 (1 HSPs)
chr5 (164-256)||(21249357-21249449)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26252371 - 26252206
Alignment:
Q  1 ataaggacatggtgaatctaacctgatactttgtattatgatatatttagtaacataactagaagtttcgatattggtttatcaatattgacaatacatg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26252371 ataaggacttggtgaatctaacctgatactttgtattatgatatatttagtaacataactagaagtttcgatattggtttatcaatattgacaatacatg 26252272  T
Q  101 agaacagagtcagacaaaaaagtaaaggtcaaacnnnnnnngtggatcaaagaggaggtgttgttt 166  Q
    ||||||| ||||||||||||||||||||||||||       ||||||||||||||| |||||||||    
T  26252271 agaacagtgtcagacaaaaaagtaaaggtcaaacaaaaaaagtggatcaaagaggaagtgttgttt 26252206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 13559650 - 13559574
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | |||||||||||||||||||||    
T  13559650 taggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaat 13559574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 2916377 - 2916465
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||| ||| |||||||| |||||||| ||| |||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatg 2916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 44594583 - 44594504
Alignment:
Q  171 cttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcc 250  Q
    |||||||||||| ||||||  ||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcc 44594504  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 11533794 - 11533709
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccc 252  Q
    |||||||||||||||||| |||||||||| |||| ||| ||| |||||||||||| | |||||||||||||| |||| ||||||||    
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtcccc 11533709  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 40987987 - 40987907
Alignment:
Q  175 ttcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctat 255  Q
    |||||||| |||||||||||| |||||| | ||| |||||||| ||||||||||||||||||||| ||| |||||||||||    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctat 40987907  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 16973064 - 16973151
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||| |||||| ||||| |||||||| ||| | |||||||||| ||||||||| |||||| |||| ||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatg 16973151  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 44594246 - 44594336
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggt-cctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||||| |||||| ||||| |||||||| ||| ||||||||||  | ||||||||||||||||||||| |||||| |||||    
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatg 44594336  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 16973412 - 16973324
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||||   |||| ||||| |||||||| ||| |||||||||||| ||||||||||||||| ||||| |||||| |||||    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatg 16973324  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 40987656 - 40987731
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    ||||||||| |||||||||||| ||||| |||||||| ||| |||||||||| | |||||||||||||||| ||||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaat 40987731  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttg 236  Q
    |||||||||| ||| |||||| ||||| |||||||| ||| |||||||| ||| ||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 38982882 - 38982825
Alignment:
Q  191 cttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggt 248  Q
    ||||| |||||||| ||| ||||||||||||  |||||||||||||||||||| ||||    
T  38982882 cttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggt 38982825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 38982552 - 38982637
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtc 249  Q
    |||| |||||| ||||||| ||| ||  |||| |||||||| ||| |||||||||  | |||||||||||||||| |||| |||||    
T  38982552 tttttggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtc 38982637  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 10824718 - 10824629
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatg 10824629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 22683140 - 22683228
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||| ||| ||  |||| |||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatg 22683228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 15825865 - 15825781
Alignment:
Q  170 gcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||| |||||||||||| |||||||| ||| |||||||||||  |||||||||||||||| |||| ||||||||||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtc--ctaactataatttgtaccaatttggtcccctatg 15825781  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 19056500 - 19056419
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggt 248  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| ||||||||||| |||| |||| ||||    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggt 19056419  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 37189699 - 37189608
Alignment:
Q  165 tttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||| |||||||||||| | |||| ||||| |||||||| ||| |||||||||||| ||| |||||||||||| |||| ||||||||||||    
T  37189699 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatg 37189608  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 18844476 - 18844546
Alignment:
Q  186 ggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||| ||||| |||||||| | | |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  18844476 ggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatg 18844546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 18844798 - 18844708
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggt-cctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||||| ||| || ||||| |||||||| ||| ||||||||||  | ||||||||||||||||||||| |||||| |||||    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatg 18844708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 19056150 - 19056236
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctat 255  Q
    |||||||||||||| | | || ||||| |||||||| ||| | |||||||||| |||| |||||||||||||||| |||||||||||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctat 19056236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 37189368 - 37189454
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||| |||||| ||||| |||||||| ||| |||||||||||   ||||||||||||||| |||| |||||| |||||    
T  37189368 ggcttattcaatcacccggtc-cttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatg 37189454  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 10824359 - 10824455
Alignment:
Q  163 gttttaggcttattcaatcatc---cggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||| ||||||||||| |   |||||  |||| |||||||| | || ||||||||||| |||| |||||||||||||||| |||||| |||||    
T  10824359 gttttaggtttattcaatcaccacccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatg 10824455  T

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Target: scaffold0781 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 5382 - 5295
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||| |||| ||||||||||||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatg 5295  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 2216925 - 2216838
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||| |||| ||||||||||||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatg 2216838  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 24690353 - 24690442
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||||| |||||||||||| |||||||| ||| |||||||||||| || ||||||||||||| |||| |||||| |||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatg 24690442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 11644099 - 11644012
Alignment:
Q  165 tttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggt-cctctaactataatttgtatcaatatggtccc 251  Q
    |||||||||||||||||| |||||| ||||| |||||||| ||| |||||||||| || ||||||||||||||||||||| |||||||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggtccc 11644012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 24798973 - 24798882
Alignment:
Q  165 tttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||||||| ||| || ||||| |||||||| ||| | |||||| ||| ||||||||||||||||||||| ||||||||||||    
T  24798973 tttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatg 24798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 11643754 - 11643836
Alignment:
Q  174 attcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||| |||||| |||||||||||||| ||| |||||||| ||| ||||||||||||||||||||| |||| |||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatg 11643836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  171 cttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctat 255  Q
    |||||||||||| ||| || ||||| |||||||| ||||| |||||||| | |||||||||||||||| |||| |||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 24798624 - 24798712
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||| || ||||| ||||| |||||||  |||||||||||||||| || ||||||||||||| |||| |||||| |||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatg 24798712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 18495079 - 18494993
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctat 255  Q
    ||||||||||||||||  ||| ||||| |||||||| | | | |||||| |||  |||||||||||||||||||| |||||||||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctat 18494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 18494732 - 18494820
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||   |||| ||||| || ||||| ||| |||||||||||| ||| |||||||||||| || | ||||||||||||    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggtcc-ctagctataatttgtaccattttggtcccctatg 18494820  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 51663598 - 51663510
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||| |||| |||||| |||||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatg 51663510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 51663245 - 51663337
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||| |||||||| ||||| |||||||||||| |||||||| ||||| ||| |||||| ||||||||||||||||||||| | ||||||||||    
T  51663245 tttttggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatg 51663337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 46003246 - 46003335
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||| ||||||||||| ||||||  |||| |||||||| ||||| |||||||||| ||||||||||||||||||||| |||||| |||||    
T  46003246 taggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatg 46003335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 20538280 - 20538207
Alignment:
Q  170 gcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    ||||||||||||| ||||||  ||||||||||||| ||| |||||||| ||| |||||||||||||||||||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaat 20538207  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 40244624 - 40244713
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatgg-tcccctatg 256  Q
    ||||||||||||||||||| || ||||| |||||||| ||| ||||||||||||  ||||||||||||||| |||| ||| |||||||||    
T  40244624 aggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatg 40244713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 46003593 - 46003511
Alignment:
Q  171 cttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccct 253  Q
    |||||| ||||||| |||| ||||| |||||||| ||| |||||||||||| ||||||| |||||||| |||| || ||||||    
T  46003593 cttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccct 46003511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactata 231  Q
    ||||||||||||||| || ||| ||||| |||||||| ||| |||||||||||| |||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 40364301 - 40364230
Alignment:
Q  172 ttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    |||||||||||   |||| ||||| |||||||| |||||||||||||||  |||||||||||||||| ||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaat 40364230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 20537925 - 20538013
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||| |||| ||||||| |||| ||||| ||||||||   | |||||||| ||| |||||||||||||||  |||| ||||||||||||    
T  20537925 aggcctattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatg 20538013  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 30862215 - 30862304
Alignment:
Q  166 ttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctat 255  Q
    |||||||||||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||||||||||||||| |||| |||||||||||    
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctat 30862304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 28715996 - 28715908
Alignment:
Q  162 tgttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcc 250  Q
    ||||||||||||||||||| | |||||| ||||| |||||||| ||| | |||||||||| |||||||||||||||| |||| ||||||    
T  28715996 tgttttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcc 28715908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 28715640 - 28715729
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||| ||||||||||| |||||| ||||| |||||| | ||||| ||||||||   ||||||||||||||||||||| ||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatg 28715729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 41985909 - 41985997
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||| || ||| ||||| |||||||| ||| |||||||| ||| ||||||||||||||| ||||| ||||||| ||||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatg 41985997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 30862564 - 30862480
Alignment:
Q  172 ttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||   |||| ||||||| |||||| ||||||||||| || | ||||||||||||||||||||| ||||||| ||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatg 30862480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 6474281 - 6474367
Alignment:
Q  170 gcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||| | | | || ||||| |||||||| ||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  6474281 gcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatg 6474367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 47373462 - 47373551
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaa--ctataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||  || |||||||| |||||||| ||| |||||||| ||||||||   ||||||||||| |||| ||||||||||||    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatg 47373551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 6474632 - 6474562
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatt 234  Q
    ||||||||||||||||||| ||| || ||||| |||||||| ||| | |||||||||  ||||||||||||    
T  6474632 ttttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataatt 6474562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 41986256 - 41986186
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgta 238  Q
    ||||||||||||||| |||||  ||||| |||||||  ||| |||||||| ||| ||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgta 41986186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 47373792 - 47373735
Alignment:
Q  186 ggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    |||| ||||| |||||||| ||| |||||||||||| |||| ||||||||||| ||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaat 47373735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 55173603 - 55173510
Alignment:
Q  166 ttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatgctt 259  Q
    ||||||||||||||||| |||||| ||||| |||||||| ||| |||||||| ||  |||||||||||||||| |||| |||||||||||||||    
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctt 55173510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 39161283 - 39161375
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||||| ||| ||  |||| |||||||||||| | |||||||||| |||||||||||||||| |||| ||||||||||||    
T  39161283 ttttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatg 39161375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 47097146 - 47097070
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    |||||||||||||||||||| |||||||| |||||||| ||| ||||||| ||||||||||||||||||||| ||||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaat 47097070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 50509476 - 50509388
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||| | || ||||| |||||||| ||| | |||||||||| |||||||||||||||| |||| ||||||||||||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatg 50509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 39161636 - 39161547
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||| ||||||||  ||||| |||||||| ||||| |||||||||| |||||||||||||||| |||| | |||| |||||    
T  39161636 taggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatg 39161547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 37996068 - 37996152
Alignment:
Q  172 ttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||| | | || ||||||| || ||| ||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatg 37996152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 55173329 - 55173417
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccc 252  Q
    |||| ||||||||| ||||||||||  ||||| |||||||| ||| | |||||||||| ||||||||||||||||| ||| ||||||||    
T  55173329 tttttggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtcccc 55173417  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 26428927 - 26428881
Alignment:
Q  208 tttcaatttggtcctctaactataatttgtatcaatatggtccccta 254  Q
    ||||||||||||||||||||| ||| |||| ||||| ||||||||||    
T  26428927 tttcaatttggtcctctaactttaaattgtctcaatttggtccccta 26428881  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 47096798 - 47096873
Alignment:
Q  167 taggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    |||||||||||||||| | | || ||||| |||||||| | | |||||||||||| ||||| |||||||||| ||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaat 47096873  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 13884488 - 13884576
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||| |||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||| |||| ||| ||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatg 13884576  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 42126377 - 42126469
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||||| |||||| ||||| |||||| | ||| |||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  42126377 ttttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatg 42126469  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 13884835 - 13884748
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||||||||||||| |||||| ||||| |||||||| ||| ||||||| |||| |||||||||||||||| |||| |||||| |||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatg 13884748  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 29714541 - 29714628
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctat 255  Q
    ||||||||||||||| |||||| ||||| |||||||| ||| |||||||||||| | ||||||| |||||| |||| |||||||||||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctat 29714628  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 11868033 - 11867942
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||||||| | |||| ||||| |||||||| ||| |||||||||| |  |||||||||||||||||||| |||||| |||||    
T  11868033 ttttaggcttattcaatcacctggtc-cttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatg 11867942  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 43416262 - 43416337
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaat 243  Q
    |||||||||||||||| ||||||||||| |||||||| ||| | |||||  ||| |||||||||||||||||||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaat 43416337  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 42126731 - 42126650
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcc 250  Q
    |||||||||||||| |||||| ||||| |||||||| | | |||||||| ||| |||||||||||||||| |||| ||||||    
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcc 42126650  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 29714889 - 29714802
Alignment:
Q  169 ggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||  |||| | |||| ||||| |||||||| ||||| ||||||||||  |||||||||||||||||||| |||||| |||||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatg 29714802  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 2554175 - 2554110
Alignment:
Q  191 cttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||| |||||||| ||| |||||||| ||| |||||||||||||||  |||| ||||| ||||||    
T  2554175 cttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatg 2554110  T

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Target: scaffold0060 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 23053 - 22965
Alignment:
Q  168 aggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    ||||||||||||||| |||||| ||||| |||||||| ||| | |||||||||| |||||||||||||||| |||| || ||| |||||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatg 22965  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 21249357 - 21249449
Alignment:
Q  164 ttttaggcttattcaatcatccggtctcttaatttaattgaatgtttcaatttggtcctctaactataatttgtatcaatatggtcccctatg 256  Q
    |||| |||||||||||||| | |||| ||||   ||||||| ||| |||||||||||| |||| ||||| ||||| |||| | ||||||||||    
T  21249357 ttttcggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatg 21249449  T

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