View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19865_high_4 (Length: 379)

Name: NF19865_high_4
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19865_high_4
NF19865_high_4
[»] chr2 (4 HSPs)
chr2 (1-295)||(16919864-16920158)
chr2 (10-66)||(7429889-7429945)
chr2 (334-363)||(16919796-16919825)
chr2 (11-87)||(44919386-44919462)
[»] chr6 (6 HSPs)
chr6 (12-148)||(2742755-2742891)
chr6 (13-124)||(287497-287608)
chr6 (13-81)||(21379342-21379410)
chr6 (17-63)||(29144396-29144442)
chr6 (13-59)||(34259155-34259201)
chr6 (13-59)||(34264520-34264566)
[»] chr5 (10 HSPs)
chr5 (14-66)||(27174371-27174423)
chr5 (13-66)||(42782293-42782346)
chr5 (13-87)||(42797142-42797216)
chr5 (1-51)||(42835412-42835462)
chr5 (1-66)||(9052385-9052450)
chr5 (1-66)||(32642041-32642106)
chr5 (13-87)||(16487605-16487679)
chr5 (13-79)||(24654592-24654658)
chr5 (13-119)||(42841485-42841591)
chr5 (33-110)||(39725460-39725537)
[»] chr7 (3 HSPs)
chr7 (17-111)||(5441486-5441580)
chr7 (17-111)||(5450496-5450590)
chr7 (18-66)||(42445433-42445481)
[»] chr1 (2 HSPs)
chr1 (17-111)||(344207-344301)
chr1 (13-83)||(51875569-51875639)
[»] chr3 (1 HSPs)
chr3 (13-66)||(9704362-9704415)
[»] scaffold0054 (1 HSPs)
scaffold0054 (13-57)||(34362-34406)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 16920158 - 16919864
Alignment:
Q  1 aaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16920158 aaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaatgttgaaaggacagagaagacaagatcttcaggtatattg 16920059  T
Q  101 ttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaaagctgaaataccaattcaaacnnnnnnnntatcaagcaaaattcatttgtat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||    
T  16920058 ttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaaagctgaaataccaattcaaacaaaaaaaatatcaagcaaaattcctttgtat 16919959  T
Q  201 catgactataaagtggaataaattacacgaaattgaggaattctnnnnnnnttcacaaaatttaaaacataaccatttcaatcaatttatttgcc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  16919958 catgactataaagtggaataaattacacgaaattgaggaattctaaaaaaattcacaaaatttaaaacataaccatttcaatcaatttatttgcc 16919864  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 7429889 - 7429945
Alignment:
Q  10 ggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    |||||||||||| | |||||||||||||||||||||||||||||  || ||||||||    
T  7429889 ggcccatgatttgcatacgcatccaaatcgcttcaaagattttattggcaattttga 7429945  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 16919825 - 16919796
Alignment:
Q  334 tcaattcagaacacgcagatacaaaattat 363  Q
    ||||||||||||||||||||||||||||||    
T  16919825 tcaattcagaacacgcagatacaaaattat 16919796  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 44919386 - 44919462
Alignment:
Q  11 gcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 87  Q
    ||||||||||||||||| ||| ||||| |||| |||||||||| ||| | |||||| || | ||||||  |||||||    
T  44919386 gcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgacagaatagagaatgcaagatc 44919462  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 2742755 - 2742891
Alignment:
Q  12 cccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 111  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| |||||| | |||| ||||| | |||||||||| | |||||  |||||||||||    
T  2742755 cccatgatttacatacgcatccaaatcgctttaaagattttagaggcaattttaacaggatagagagggcaagatcttcggatatatgattgctaacctt 2742854  T
Q  112 aacatttgtggcagacacgaatttcttcatctccaaa 148  Q
     |||||| | |||  ||| | ||||||||||| ||||    
T  2742855 tacatttatagcacccacaattttcttcatcttcaaa 2742891  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 287497 - 287608
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctta 112  Q
    ||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||| || ||||||||  | |||||| | ||||| ||  |||| ||||    
T  287497 ccatgatttacatacacatccaaatcgttttaaagattttagaggcaattttgaaaagatagagaagatcaaatcttctgatatatggtcactaaactta 287596  T
Q  113 acatttgtggca 124  Q
    | ||||||||||    
T  287597 agatttgtggca 287608  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 21379342 - 21379410
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagac 81  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| || || || | |||||||||    
T  21379342 ccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaagac 21379410  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 29144442 - 29144396
Alignment:
Q  17 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattt 63  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  29144442 gatttacgaacgcatccaaatcgcttcaaagatttaagaggcaattt 29144396  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 34259155 - 34259201
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggta 59  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  34259155 ccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34259201  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 34264520 - 34264566
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggta 59  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  34264520 ccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34264566  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 27174371 - 27174423
Alignment:
Q  14 catgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27174371 catgatttgcgtacgcatccaaatcgcttcaaagatttcagaggtaattttga 27174423  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 42782346 - 42782293
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  42782346 ccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttga 42782293  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 42797142 - 42797216
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 87  Q
    |||||||||| ||||  ||| |||||||||||||||||| | |||||||||||| || | |||||||| ||||||    
T  42797142 ccatgatttaagtacatatcaaaatcgcttcaaagatttaataggtaattttgagagaatagagaagaaaagatc 42797216  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42835412 - 42835462
Alignment:
Q  1 aaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattt 51  Q
    |||||||| || |||||||||  ||||||||||||||||||||||||||||    
T  42835412 aaacaaaagggaccatgatttgtgtacgcatccaaatcgcttcaaagattt 42835462  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9052450 - 9052385
Alignment:
Q  1 aaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    |||||||| ||  |||||||| |||||||||||||||  ||| |||||||||| ||||||||||||    
T  9052450 aaacaaaagggttcatgatttgcgtacgcatccaaatttctttaaagattttacaggtaattttga 9052385  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32642106 - 32642041
Alignment:
Q  1 aaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    ||||||||| | |||||||||||||||  || ||||| ||| ||||||||| ||||||||||||||    
T  32642106 aaacaaaaatgaccatgatttacgtacatattcaaattgctacaaagatttaagaggtaattttga 32642041  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 16487605 - 16487679
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 87  Q
    |||||||||  ||||||||||||| | |||||||||||| | ||||| |||||| || | |||||||| ||||||    
T  16487605 ccatgatttgtgtacgcatccaaacctcttcaaagatttgataggtagttttgagagaagagagaagaaaagatc 16487679  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 24654658 - 24654592
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaag 79  Q
    ||||||||||||||| || ||||| ||||| || ||||||| ||||||||| ||||| | |||||||    
T  24654658 ccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagagaag 24654592  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 42841485 - 42841591
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctta 112  Q
    |||||||||| |||||||| ||||| ||||||||||||  | ||| | |||||| || | | ||||||||| ||| || ||||| |  |||||||||| |    
T  42841485 ccatgatttatgtacgcattcaaatggcttcaaagattcaatagggagttttgagagaatatagaagacaatatcatcgggtatgtgattgctaacctga 42841584  T
Q  113 acatttg 119  Q
    |||||||    
T  42841585 acatttg 42841591  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 39725460 - 39725537
Alignment:
Q  33 caaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacct 110  Q
    ||||||||||||||||||| | ||| | |||||| || | ||||||||||| ||| ||||||| ||  ||||||||||    
T  39725460 caaatcgcttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggtacatgattgctaacct 39725537  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 5441580 - 5441486
Alignment:
Q  17 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 111  Q
    ||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |  | ||||||||||||||| | ||||||||  || ||||||||    
T  5441580 gatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggtatatcatttctaacctt 5441486  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 5450590 - 5450496
Alignment:
Q  17 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 111  Q
    ||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |  | ||||||||||||||| | ||||||||  || ||||||||    
T  5450590 gatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggtatatcatttctaacctt 5450496  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 42445481 - 42445433
Alignment:
Q  18 atttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    ||||||| || ||| |||||||||| |||||||| ||||||||||||||    
T  42445481 atttacgaacacattcaaatcgcttaaaagatttaagaggtaattttga 42445433  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 344301 - 344207
Alignment:
Q  17 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 111  Q
    ||||||| |||||||||||| || |||||||| || | ||||||||| || || ||| |||||| |||||| | ||||||||  ||| |||||||    
T  344301 gatttacttacgcatccaaaacgtttcaaagacttcaaaggtaatttagatagaacaaagaagataagatcattaggtatatgtttgttaacctt 344207  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 51875569 - 51875639
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaa 83  Q
    ||||||||||| ||| |||||||||||||| |||||||  ||||||| |||||| || |  ||||||||||    
T  51875569 ccatgatttacatacacatccaaatcgctttaaagattgaagaggtagttttgatagaatcgagaagacaa 51875639  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 9704415 - 9704362
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 66  Q
    |||||||||||| || |||| |||||| || |||||||| ||||||||||||||    
T  9704415 ccatgatttacgaacacatctaaatcgttttaaagatttcagaggtaattttga 9704362  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 34362 - 34406
Alignment:
Q  13 ccatgatttacgtacgcatccaaatcgcttcaaagattttagagg 57  Q
    |||||||||||| ||||||| |||||| ||||||||||| |||||    
T  34362 ccatgatttacgaacgcatcgaaatcggttcaaagatttaagagg 34406  T

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