View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19865_high_8 (Length: 313)

Name: NF19865_high_8
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19865_high_8
NF19865_high_8
[»] chr1 (1 HSPs)
chr1 (1-295)||(49412549-49412843)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 49412549 - 49412843
Alignment:
Q  1 ctattcatcacattctttaagaaggcaatgtgtgcacgaaaagagtagtttgaaatgaagaataaaaaagaggaaattattggactgaagtaaggaaaag 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49412549 ctattcatcacattctttaagaagtctatgtgtgcacgaaaagagtagtttgaaatgaagaataaaaaagaggaaattattggaatgaagtaaggaaaag 49412648  T
Q  101 ttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcctcattccctacacattatgaagtttagctacataaatttgggggagaagatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49412649 ttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcctcattccctacacattatgaagtttagctacataaatttgggggagaagatg 49412748  T
Q  201 aaattgtgaaaaaccatatagttgaagaagaatattctaggnnnnnnngtggaaaattggacgacaggtttgtcatattagacgcattttgtctt 295  Q
    |||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||    
T  49412749 aaattgtgaaaaaccatatagttgaagaagaaaattctaggaaaaaaagtggaaaattggacgacaggtttgtcacattagacgcattttgtctt 49412843  T

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