View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_13 (Length: 250)
Name: NF19865_low_13
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 8696978 - 8696751
Alignment:
| Q |
8 |
ccaataatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatc |
107 |
Q |
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| T |
8696978 |
ccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatc |
8696879 |
T |
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| Q |
108 |
ccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatggtaatataatgcatgcttaattagcacaataacaccg |
207 |
Q |
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| T |
8696878 |
ccatcaaggtgggcaatctttcttatggatctaatgaatatctattatatattctacat---------------catgcttaattagcacaataacaccg |
8696794 |
T |
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| Q |
208 |
atgctaatatcagatttttgaccgactaactcttattaatttt |
250 |
Q |
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| T |
8696793 |
atgctaatatcagatttttgaccgactaactcttattaatttt |
8696751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 8677702 - 8677916
Alignment:
| Q |
8 |
ccaataatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatc |
107 |
Q |
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| T |
8677702 |
ccaacaatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaatagtttcctcgtatc |
8677801 |
T |
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| Q |
108 |
ccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatggtaat-------ataatgcatgcttaattagcacaat |
200 |
Q |
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| T |
8677802 |
tcatcaaggtggacaatctttaatatggatctaatgattatctattat--attctacatcatggtactataatgcataatgcatgcttaattaacacaat |
8677899 |
T |
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| Q |
201 |
aacaccgatgctaatat |
217 |
Q |
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| T |
8677900 |
aacgcggatgctaatat |
8677916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 8673613 - 8673655
Alignment:
| Q |
13 |
aatattacttcacacaccacttcactcaaataagaaaaacaag |
55 |
Q |
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| T |
8673613 |
aatattacttcacacaccacttcactcaaataaggaaaacaag |
8673655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 8692328 - 8692377
Alignment:
| Q |
13 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttctta |
62 |
Q |
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| T |
8692328 |
aatattacttcacacaccatttcactcaattaacgcaaacaagcttctta |
8692377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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