View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_15 (Length: 240)
Name: NF19865_low_15
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_15 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 51863 - 51677
Alignment:
| Q |
20 |
acaaactaacttgacagaaaccatggttgaataatatacagggtgaacgcgtgaataaatttaacttaagcgaatataagcaatgggaaaaaactatggg |
119 |
Q |
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| T |
51863 |
acaaactaacttgacagaaaccatggttgaataatatacagggagaacgcgtgaataaatttagcttaagcgaatataagcaatgggaaaaaactatggg |
51764 |
T |
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| Q |
120 |
atccctaccatataaacaaccgatcatgtatacgcaaaaaattgtactttctccctctcatggggactgtattctgttttccaaaac |
206 |
Q |
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| T |
51763 |
atccctaccatttaaacaaccgatcatgtatacgcaaaaaattgtactttctccctctcatggggactgtattctgttttccaaaac |
51677 |
T |
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