View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19865_low_16 (Length: 239)
Name: NF19865_low_16
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_16 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 8696004 - 8696226
Alignment:
| Q |
17 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgatggtgttaaatttgttcaacctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8696004 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgattgtgttaaatttgttcaacctt |
8696103 |
T |
|
| Q |
117 |
tttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgcacggttagatacatccttttgttgttgtgatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696104 |
tttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgcacggttagatacatccttttgttgttgtgatcaa |
8696203 |
T |
|
| Q |
217 |
tagctttgagttccttcgccgca |
239 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
8696204 |
tagctttgagttccttggccgca |
8696226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 8675031 - 8674809
Alignment:
| Q |
17 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgatggtgttaaatttgttcaacctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8675031 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgatggtgttaaatttgttcaacctt |
8674932 |
T |
|
| Q |
117 |
tttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgcacggttagatacatccttttgttgttgtgatcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
8674931 |
tttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgaacggttaggtacatcctcttgttgttgtgatcaa |
8674832 |
T |
|
| Q |
217 |
tagctttgagttccttcgccgca |
239 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8674831 |
tagctttgagttccttcgccgca |
8674809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 8687435 - 8687657
Alignment:
| Q |
17 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgatggtgttaaatttgttcaacctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8687435 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgattgtgttaaatttattcaacctt |
8687534 |
T |
|
| Q |
117 |
tttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgcacggttagatacatccttttgttgttgtgatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
8687535 |
tttagttctttgatggcttgactaagttgatcaacactatcattaatttgattcacacaatcttgcacggttaggtacatcctcttgttgttgtgatcaa |
8687634 |
T |
|
| Q |
217 |
tagctttgagttccttcgccgca |
239 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
8687635 |
tagctttgagttcctttgccgca |
8687657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 8693262 - 8693047
Alignment:
| Q |
17 |
actactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgatggtgttaaatttgttcaacctt |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8693262 |
actactagcatcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgattgtgttaaatttattcaacctt |
8693163 |
T |
|
| Q |
117 |
tttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgcacggttagatacatccttttgttgttgtgatcaa |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8693162 |
tttagttctttgatggcttggctaagttgatcaacactatcattgatttgattcacacaatcttgcacggttaggtacatccttttgttgttgtgatcaa |
8693063 |
T |
|
| Q |
217 |
tagctttgagttcctt |
232 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8693062 |
tagctttgagttcctt |
8693047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University