View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_2 (Length: 587)
Name: NF19865_low_2
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 412 - 571
Target Start/End: Original strand, 40662255 - 40662414
Alignment:
| Q |
412 |
taaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcaaataaagaatggctacaatgtgcaagagcaatcttcttaatcaat |
511 |
Q |
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| T |
40662255 |
taaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcaaataaagaatggctacaatgtgcaagagcaatcttcttaatcaat |
40662354 |
T |
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| Q |
512 |
cagagattctttgaaacaaaggagagaaacggttattcccattatattcaaagtggaata |
571 |
Q |
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| T |
40662355 |
cagagattctttgaaacaaaggagagaaacggttattcccattatattcaaagtagaata |
40662414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 40675564 - 40675708
Alignment:
| Q |
163 |
ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt |
262 |
Q |
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| T |
40675564 |
ggagggagggccttctgtgcataaacgtagagcgcgtaatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt |
40675663 |
T |
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| Q |
263 |
tgaacccttgagatccagcattctaaacatttccccaagagcaac |
307 |
Q |
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| T |
40675664 |
tgaacccttgagatccagcattctaaacatttccccaagagcaac |
40675708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 40662007 - 40662152
Alignment:
| Q |
162 |
gggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctggg |
261 |
Q |
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| T |
40662007 |
gggagggagggccttctgtgcatagacgtagaccgcataatttccaatgagaaatgtcaacagcaacccaccaataacgaggagaacaatcaagtctggg |
40662106 |
T |
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| Q |
262 |
ttgaacccttgagatccagcattctaaacatttccccaagagcaac |
307 |
Q |
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| T |
40662107 |
ttgaacccttgagatccagcattctaaacatttccccaagagcaac |
40662152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 412 - 570
Target Start/End: Original strand, 40675797 - 40675955
Alignment:
| Q |
412 |
taaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcaaataaagaatggctacaatgtgcaagagcaatcttcttaatcaat |
511 |
Q |
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| T |
40675797 |
taaccaccactcacaatcatccatgtatacaaatagtaatatgaattgcagagcagataaagaatggctgcaatgtgcaagtgcaatcttcttaatcaac |
40675896 |
T |
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| Q |
512 |
cagagattctttgaaacaaaggagagaaacggttattcccattatattcaaagtggaat |
570 |
Q |
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| T |
40675897 |
cagagaaactttgaaacaaaggagagaagtggtttttcccattatattcaaagtagaat |
40675955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 40661860 - 40661967
Alignment:
| Q |
15 |
cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc |
114 |
Q |
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| T |
40661860 |
cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc |
40661959 |
T |
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| Q |
115 |
agcctctc |
122 |
Q |
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| T |
40661960 |
agcctctc |
40661967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 40656732 - 40656866
Alignment:
| Q |
163 |
ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt |
262 |
Q |
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||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
40656732 |
ggagggagggccttctgtgcataaacataaagcgcataatttccaatgaggaatgtcaacagcagcccaccaataaccaggagaactactaagcctgggt |
40656831 |
T |
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| Q |
263 |
tgaacccttgagatccagcattctaaacatttccc |
297 |
Q |
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| T |
40656832 |
tgaacccttgagatccagctttctaaatatttccc |
40656866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 40675416 - 40675523
Alignment:
| Q |
15 |
cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
40675416 |
cacagaaccagaattctttaaaaagtacaaggtaatccacattcaacagaacatttgagtaaaatgcctttactctccaggtgcagagactccttgcttc |
40675515 |
T |
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| Q |
115 |
agcctctc |
122 |
Q |
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|||||||| |
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| T |
40675516 |
agcctctc |
40675523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 40656603 - 40656691
Alignment:
| Q |
34 |
aaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc |
122 |
Q |
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| T |
40656603 |
aaaaagtacaaggtaatccacattccgtagaacatttgagtacattgcccctactctccaggtgcagagactccttgcttcagtctctc |
40656691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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