View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_3 (Length: 488)
Name: NF19865_low_3
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 35576539 - 35577014
Alignment:
| Q |
1 |
agattcatatatctataaccaacttaataacttaaggttttgagtgaagatgtagtgttc-aactcatatgtgtggtttctcttagtctaatgtaacgat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |
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| T |
35576539 |
agattcatatatctataaccaacttaataacttaaggttttgagtgaagatgtagtgttctaattcatttgtgtggtttctcttagtctaatgtaacgat |
35576638 |
T |
|
| Q |
100 |
cgaagtagagattttaatgctccacctgaagttgcatgaaatttgacccacgctcccccgtcaaatcgataccgcttattaaagagtttgaatgagcatg |
199 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35576639 |
tgaatcagggattttaatgctccacctgaagttgcatgaaatttgactcacgctcccccgtcaagtcgatacctcttattaaagagtttgaatgagcatg |
35576738 |
T |
|
| Q |
200 |
agaagcaagtatgaaccaatgtttcatgataacaagagatggagacattgtctctcaactcaaaaactctttagtcattagatatattaatcatttctct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35576739 |
agaagcaagtatgaaccaatgtttcatgataacaagagatggagacattgtctctcaactcaaaaaccctttagtcattagatatattaatcatttctct |
35576838 |
T |
|
| Q |
300 |
catatatccaatgttttactcgtttataattgatatacgactaaccaatcatacttaaacccaacatattcacgcctctaatgctagaaggtcttgaaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35576839 |
catatatccaatgttttactcgtttataattgatatacgactaaccaatcatacttaaacccaacatattcacgcctctaatgctagaaggtcttgaaat |
35576938 |
T |
|
| Q |
400 |
tcattactcaatcattccatcatacaaacccaaaacaatttatgttgttggtttgagttcatatgtgtgttatttg |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35576939 |
tcattactcaatcattccatcatacaaacccaaaacaatttatgttgttggtttgagttcatatgtgtgttatttg |
35577014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 2041166 - 2041220
Alignment:
| Q |
31 |
cttaaggttttgagtgaagatgtagtgttcaactcatatgtgtggtttctcttag |
85 |
Q |
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|||||||||||| |||||||||| |||| ||||||| ||||||||| ||||||| |
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| T |
2041166 |
cttaaggttttgggtgaagatgtggtgtccaactcacttgtgtggttgctcttag |
2041220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 24180665 - 24180605
Alignment:
| Q |
25 |
taataacttaaggttttgagtgaagatgtagtgttcaactcatatgtgtggtttctcttag |
85 |
Q |
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||||| ||||||||||||| |||| ||||||||| ||||||| | || |||||||||||| |
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| T |
24180665 |
taatatcttaaggttttgaatgaaaatgtagtgtcaaactcatttttggggtttctcttag |
24180605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 7844607 - 7844541
Alignment:
| Q |
24 |
ttaataacttaaggttttgagtgaagatgtagtgttcaactcatatgtgtggtttctcttagtctaa |
90 |
Q |
| |
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||||| ||||||||||| |||||||||||| |||| |||||| |||||||||||| ||| ||||| |
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| T |
7844607 |
ttaatgacttaaggtttagagtgaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaa |
7844541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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