View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_5 (Length: 357)
Name: NF19865_low_5
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 23783609 - 23783855
Alignment:
| Q |
18 |
aagaggccctccaattcttcttttcaaatttagccaatctattttagaattgtat-------tagt-----------tcttaatccataatgattcatct |
99 |
Q |
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| T |
23783609 |
aagaggccctccaattcttcttttcaaatttagccaatctgttttagaattatatcaaatcttagaattatatcaaatcttaatccataatgattcatct |
23783708 |
T |
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| Q |
100 |
attaacaatgaagttctgcgatcgcaatctagaccatgacaaaatgctttttgatgttcctgattgaaaccacataatttgattgcaatttttctcaata |
199 |
Q |
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| T |
23783709 |
attaacaatgaagttctgcgttcgcaatctagaccatgacaaaatgctttttggtgttccttattgaaaccacataatttgattgcaatttttctcaata |
23783808 |
T |
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| Q |
200 |
ttaagattgtgatgcaactgcgaccgcaatttaaaaccttggaaatg |
246 |
Q |
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| T |
23783809 |
ttaagattgcgatgcaactgcgaccgcaatttaaaaccttggaaatg |
23783855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 23783854 - 23783923
Alignment:
| Q |
279 |
tgtagaaataccttttatgtagaatctctataatcctcctataatcatctagctcaaaagcagcctttga |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23783854 |
tgtagaaataccttttatgtagaatctctataatcctcctataatcatctagctcaaaagcagcctttga |
23783923 |
T |
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