View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_6 (Length: 349)
Name: NF19865_low_6
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 41126806 - 41126476
Alignment:
| Q |
1 |
attgtttttgctcaatctcctttccttggcttccttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126806 |
attgtttttgctcaatctcctttccttggcttccttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcc |
41126707 |
T |
|
| Q |
101 |
catcgtttacggaataaaatccgagtcactttgggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126706 |
catcgtttacggaataaaatccgagtcactttgggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgt |
41126607 |
T |
|
| Q |
201 |
cgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatattgaaggtggtcaacaactttgatcgaatcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126606 |
cgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatattgaaggtggtcaacaactttgatcgaatcagt |
41126507 |
T |
|
| Q |
301 |
ggattctgaagataatttaagacggtcgagg |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
41126506 |
ggattctgaagataatttaagacggtcgagg |
41126476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 2350767 - 2350534
Alignment:
| Q |
34 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttg |
133 |
Q |
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|||||||||||| || |||||||| | ||||||||||||||| ||||| ||||||||||| || ||||||||||| | || ||||||||||| ||||| |
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| T |
2350767 |
cttcctcgctctaatcagcggaagcaaaacatcttcttgatcctttcgtaacttcaacaactcttcccatcgtttgcaaaacaaaatccgagtaactttt |
2350668 |
T |
|
| Q |
134 |
ggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaa |
233 |
Q |
| |
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|| ||| ||| | || ||||||||||| | || | ||||| || |||||||||| | || || || |||||||| ||||||||||||| |||||||| |
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| T |
2350667 |
ggccagaaatttattatattgaatttgttaacactcaacagaattgtcctttgtacacgctcaatatcactgattttctcatcattaactctttcaccaa |
2350568 |
T |
|
| Q |
234 |
aacacataaaaacgagtaagcaaaacattgcata |
267 |
Q |
| |
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||||||| ||||| ||||| || ||||| ||||| |
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| T |
2350567 |
aacacatgaaaacaagtaaacagaacatagcata |
2350534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 2330461 - 2330237
Alignment:
| Q |
34 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttg |
133 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| || ||||||| || ||||| |
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| T |
2330461 |
cttcctcgctcttatcagcggaagcagaacatcttcttgatctttaagcaacttcgccaactcatcccatcgtttacgcaacaaaatccttgtaactttc |
2330362 |
T |
|
| Q |
134 |
ggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaa |
233 |
Q |
| |
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|| ||| ||||| || || ||| || | | | | ||||| | |||||||||| | || || ||| | ||||| ||||| ||||||| |||||||| |
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| T |
2330361 |
ggccagaaattcagtatattaaatctgctaaaattcaacagaatcgtcctttgtacacgctcaatatcgttaattttctcatcgttaactctttcaccaa |
2330262 |
T |
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| Q |
234 |
aacacataaaaacgagtaagcaaaa |
258 |
Q |
| |
|
||||||||||||| ||||| ||||| |
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| T |
2330261 |
aacacataaaaacaagtaaacaaaa |
2330237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 267
Target Start/End: Complemental strand, 2303190 - 2302958
Alignment:
| Q |
35 |
ttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttgg |
134 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| || | |||||||| || |||| |||||| ||||| || ||||||| || ||||| | |
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| T |
2303190 |
ttcctcgctcttatcagcggaagtagaacatcctcttgatccttaagtaacttcaaaaactccttccatcggttacgcaacaaaatccttgtaactttcg |
2303091 |
T |
|
| Q |
135 |
gaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaa |
234 |
Q |
| |
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| ||| ||||| || |||||| || || | || || || || | |||| ||| | || || || ||||| || ||||| ||||||| ||||||||| |
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| T |
2303090 |
gccagaaattcagtatattgaatctgccgatatttaacataattgtcatttgcacacgctcaatatcactgatattctcatcgttaactctttcaccaaa |
2302991 |
T |
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| Q |
235 |
acacataaaaacgagtaagcaaaacattgcata |
267 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| |
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| T |
2302990 |
acacataaaaacaagtaagctaaacatagcata |
2302958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 2326746 - 2326658
Alignment:
| Q |
34 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatcc |
122 |
Q |
| |
|
||||||| ||||||| |||||||| | |||||||||||||||| | |||||| ||||||||||||||||| ||||||| || ||||||| |
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| T |
2326746 |
cttcctccctcttatcagcggaagcaaaacatcttcttgatctctacgcaacatcaacaattcctcccattgtttacgcaacaaaatcc |
2326658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 2320892 - 2320668
Alignment:
| Q |
34 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttg |
133 |
Q |
| |
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|||||| |||||||| |||||||| |||||||| |||||||| || | |||||||| || ||||||||||| ||||| || ||||||| || |||| |
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| T |
2320892 |
cttccttgctcttatcagcggaagcagaacatcctcttgatccttaagtaacttcaaaaactcctcccatcggttacgcaacaaaatccttgtacctttc |
2320793 |
T |
|
| Q |
134 |
ggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaa |
233 |
Q |
| |
|
|| | | ||||| || |||||| || | | | | ||||| || |||||||||| | || || || |||||||| ||||| ||||||| |||||||| |
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|
| T |
2320792 |
ggccaaaaattcagtatattgaatctgctaatattcaacagaattgtcctttgtacacgctcaatatcactgattttctcatcgttaactctttcaccaa |
2320693 |
T |
|
| Q |
234 |
aacacataaaaacgagtaagcaaaa |
258 |
Q |
| |
|
||||||||||||| ||||| ||||| |
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|
| T |
2320692 |
aacacataaaaacaagtaaacaaaa |
2320668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 2293431 - 2293343
Alignment:
| Q |
181 |
cctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatatt |
269 |
Q |
| |
|
|||||||||| | || || || |||||||| ||||| ||||||| ||||||||||||||||||||| ||||| | ||||| ||||||| |
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| T |
2293431 |
cctttgtacacgctcaatatcactgattttctcatcgttaactctttcaccaaaacacataaaaacaagtaaagagaacatagcatatt |
2293343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 2309762 - 2309674
Alignment:
| Q |
181 |
cctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatatt |
269 |
Q |
| |
|
|||||||||| | || || || |||||||| ||||| ||||||| ||||||||||||||||||||| ||||| | ||||| ||||||| |
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|
| T |
2309762 |
cctttgtacacgctcaatatcactgattttctcatcgttaactctttcaccaaaacacataaaaacaagtaaagagaacatagcatatt |
2309674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 2326574 - 2326508
Alignment:
| Q |
206 |
attttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatattgaa |
272 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||| ||||| || ||||| ||||| |||| |
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|
| T |
2326574 |
attttttcatcgttaactctttcaccaaaacacataaaaacaagtaaacagaacatagcataatgaa |
2326508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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