View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19865_low_7 (Length: 341)
Name: NF19865_low_7
Description: NF19865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19865_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 31862954 - 31862694
Alignment:
| Q |
21 |
gtaaacttagatccccaagaacacaagaaaggnnnnnnnnn-tagtatgcagatataaggcaaagatggagaacacaaagagtaatata-gaagaagcac |
118 |
Q |
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| T |
31862954 |
gtaaacttagatccccaagaacacaagaaaggaaaaaaaaaatagtatgcagatataaggcaaagatggagaacacaaagagtaataaaagaagaagtac |
31862855 |
T |
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| Q |
119 |
aatagagaagtataagatgaaatgaggacgaaacggcaaggcggcgactttaatagaacaagtgacaagaaaggaggtgtggatttagggttaggaaatg |
218 |
Q |
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| T |
31862854 |
aatagagaagtataagatgaaatgaggacgaaacggcaaggcggcgactttaatagaacaagtgacaagaaaggaggtgtggatttagggttaggaaatg |
31862755 |
T |
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| Q |
219 |
ggtcgggtctaggtaagttagatgttatggtagacacaagcccaaacatcgagacccttaa |
279 |
Q |
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| T |
31862754 |
ggtcgggtctaggtaagttagatgttatagtagacaaaagcccaaacatcgagacccttaa |
31862694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 31929070 - 31928909
Alignment:
| Q |
81 |
aaagatggagaacacaaagagtaatatagaagaagcacaatagagaagtataagatgaaatgaggacgaaacggcaaggcggcgacttt-aatagaacaa |
179 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| |
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| T |
31929070 |
aaagatggagaaaacaaagagtaataaagaagaagcacaatagaaaagtataagatgaaatgaggaagaaacggc--ggcggaaacttttaatagaacaa |
31928973 |
T |
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| Q |
180 |
gtgacaagaaaggaggtgtggatttagggttaggaaatgggtcgggtctaggtaagttagatgt |
243 |
Q |
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| T |
31928972 |
gtgacaagaaaggaggtgtggatttagggttaggaaatgggttgggtctaggtaagttatatgt |
31928909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 31897112 - 31896966
Alignment:
| Q |
81 |
aaagatggagaacacaaagagtaatatagaagaagcacaatagagaagtataagatgaaatgaggacgaaacggcaaggcggcgac-tttaatagaacaa |
179 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||| || ||||||| ||||| |
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| T |
31897112 |
aaagatggagaacaca--gagtaataaagaagaagcacaatagagaagtataagatgaaatgaggaagaaacg--acggcggaaacttttaatacaacaa |
31897017 |
T |
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| Q |
180 |
gtgacaagaaaggaggtgtggatttagggttaggaaatgggtcgggtctag |
230 |
Q |
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| T |
31897016 |
gtgacaagaaaggaggtacggatctagggttaggaaatgagccgggtctag |
31896966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 31870744 - 31870896
Alignment:
| Q |
131 |
taagatgaaatgaggacgaaacggcaaggcggcgac----tttaatagaacaagtgacaagaaaggaggtgtggatttagggttaggaaatgggtcgggt |
226 |
Q |
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||||||||||| |||| | |||| | |||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| || | |
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| T |
31870744 |
taagatgaaataaggaagtaacgaccaggcggcgacatcttttagtagaacaagtcacaagaaaggaagtgtggatttagggttagttaatgggttggat |
31870843 |
T |
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| Q |
227 |
ctaggtaagttagatgttatggtagacacaagcccaaacatcgagacccttaa |
279 |
Q |
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|||||||||||||||||||| || ||||||| |||||| ||||| ||||||| |
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| T |
31870844 |
ctaggtaagttagatgttatagttgacacaaccccaaaagtcgagtcccttaa |
31870896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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