View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_high_11 (Length: 341)
Name: NF19866_high_11
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 22328968 - 22328646
Alignment:
| Q |
1 |
agcctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactgaaggattgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328968 |
agcctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactgaaggattgtaa |
22328869 |
T |
|
| Q |
101 |
ctggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatggccactgttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22328868 |
ctggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatggccactgttac |
22328769 |
T |
|
| Q |
201 |
caccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctcttgatgctgatgctgttgttg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22328768 |
caccatctgcagcattagcattaatattattagcattccaagccatcattctattcaatctgccgttatcatgttcctcttgatgctgctgctgttgttg |
22328669 |
T |
|
| Q |
301 |
ctgctcagaccacaaggtgcttc |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
22328668 |
ctgctcagaccacaaggtgcttc |
22328646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 2534998 - 2535105
Alignment:
| Q |
181 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
280 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
2534998 |
agcaccatggccactgttaccaccatctacagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgatcctct |
2535097 |
T |
|
| Q |
281 |
tgatgctg |
288 |
Q |
| |
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|| ||||| |
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| T |
2535098 |
tgctgctg |
2535105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 11447860 - 11447753
Alignment:
| Q |
181 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
280 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11447860 |
agcaccatggccactgttaccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgttcctct |
11447761 |
T |
|
| Q |
281 |
tgatgctg |
288 |
Q |
| |
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|| ||||| |
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| T |
11447760 |
tgctgctg |
11447753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 32507075 - 32507022
Alignment:
| Q |
70 |
atctatccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
123 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507075 |
atctaaccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
32507022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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