View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19866_high_17 (Length: 257)

Name: NF19866_high_17
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19866_high_17
NF19866_high_17
[»] chr3 (2 HSPs)
chr3 (18-243)||(32412285-32412510)
chr3 (23-235)||(6907180-6907392)
[»] chr8 (12 HSPs)
chr8 (17-248)||(7165984-7166215)
chr8 (17-232)||(3326316-3326531)
chr8 (20-243)||(3408642-3408865)
chr8 (17-235)||(3263858-3264076)
chr8 (17-235)||(3268556-3268774)
chr8 (17-232)||(3313379-3313594)
chr8 (93-235)||(3287785-3287927)
chr8 (17-223)||(13786167-13786373)
chr8 (18-220)||(31174381-31174583)
chr8 (17-232)||(3392919-3393134)
chr8 (17-232)||(3362749-3362964)
chr8 (17-220)||(3399965-3400168)
[»] chr2 (1 HSPs)
chr2 (17-241)||(14768242-14768466)
[»] chr5 (4 HSPs)
chr5 (60-248)||(30416505-30416693)
chr5 (129-232)||(15801625-15801728)
chr5 (145-232)||(12596389-12596476)
chr5 (153-220)||(20810772-20810839)
[»] scaffold0468 (1 HSPs)
scaffold0468 (23-234)||(7587-7798)
[»] chr7 (2 HSPs)
chr7 (32-220)||(8373075-8373263)
chr7 (120-223)||(36215342-36215445)
[»] chr6 (7 HSPs)
chr6 (120-223)||(5356066-5356169)
chr6 (89-223)||(5068524-5068658)
chr6 (89-223)||(5424171-5424305)
chr6 (111-182)||(5175306-5175377)
chr6 (111-182)||(5277133-5277204)
chr6 (120-181)||(5104364-5104425)
chr6 (120-209)||(5133369-5133458)
[»] chr4 (1 HSPs)
chr4 (17-61)||(6665720-6665764)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 32412510 - 32412285
Alignment:
Q  18 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412510 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 32412411  T
Q  118 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412410 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 32412311  T
Q  218 ctttatcggcaaggacagggcctatg 243  Q
    ||||||||||||||||||||||||||    
T  32412310 ctttatcggcaaggacagggcctatg 32412285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 6907392 - 6907180
Alignment:
Q  23 ttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagaga 122  Q
    ||||||||||||||| ||  | ||| ||||| |||| ||||||||||||| || ||||||||||  |||||||| ||||||  | |||||  |||| | |    
T  6907392 ttactgtggaggattacccttggctgttgaagtcctcggatcttacttatttgaaaggacaaaagaagaatggaaaagtgtgctatcaaagttagaaaaa 6907293  T
Q  123 attcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttcttta 222  Q
    |||||  ||||  |||| ||||||||| | | |||||||||||| ||||| |  ||||| |   | |||| ||||||||||||  |||||| ||||||||    
T  6907292 attccccatgaagaagtgcaagagaaattgaaaataagctatgatggtttgacagatgacacaaagaaggctatatttcttgatgtatgttgtttcttta 6907193  T
Q  223 tcggcaaggacag 235  Q
    |||||||||||||    
T  6907192 tcggcaaggacag 6907180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 7166215 - 7165984
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    |||||| || ||||||||||| ||||| ||||||||| || | || ||||||||||| || |||||||||  |||||||  ||||||| | |  ||| ||    
T  7166215 agttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggaggacaaaacaagaatgggaaagtgtactcttgaaatta 7166116  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    ||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||    
T  7166115 gagagaattcccaatgatcaagtgcaagagaaactgagaataagctatgacggtttaaaggatgatatggcaaaggatatatttcttgatatatgttgtt 7166016  T
Q  217 tctttatcggcaaggacagggcctatgctact 248  Q
    |||||||||||||||| || ||||||| ||||    
T  7166015 tctttatcggcaaggatagagcctatgttact 7165984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 3326531 - 3326316
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||| || ||||||||||  |||||||||  |||||||| ||||||| | |  ||| ||    
T  3326531 agttgcttattgtggaggattaccagttgctcttgaagtccttggttcatacttatatgagaggacaaaacaagaatggataagtgtactcttgaaatta 3326432  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  3326431 gagagaattcccaatgatcaagtgcaagagaaactgagaattagctacgatggtttaaaggatgatatggaaaaagatatatttcttgacatatgttgtt 3326332  T
Q  217 tctttatcggcaagga 232  Q
    ||||||| ||||||||    
T  3326331 tctttataggcaagga 3326316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 3408865 - 3408642
Alignment:
Q  20 tgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagag 119  Q
    |||||| |||||||| || ||||| ||||||||| |||||||||| ||||||| ||  |||||||||  |||||||| ||| ||| | |||||  |||||    
T  3408865 tgcttattgtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaagaatggataagcgtactatcaaagttagag 3408766  T
Q  120 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct 219  Q
    |||||||| ||||| ||||| || ||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  3408765 agaattcccaatgatcaagtgcacgagaagctgagaataagctatgatggtttaaaggatgatatggtaaaggatatatttcttgacatttgttgtttct 3408666  T
Q  220 ttatcggcaaggacagggcctatg 243  Q
    |||| || ||||||||||||||||    
T  3408665 ttattggtaaggacagggcctatg 3408642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 3264076 - 3263858
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    ||||||||| ||  ||||||| ||||| ||||| ||| |||| || ||||| || ||||  |||||||||  |||||||  |||| || | |||||| ||    
T  3264076 agttgcttattgcagaggattaccactggctctggaagtcctaggttcttagttgtatgagaggacaaaagaagaatgggaaagtatactctcaaaatta 3263977  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    ||||||||||| ||||| ||||| |||||||| || |||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  3263976 gagagaattcccaatgatcaagtgcaagagaagctgagaataagttacgatggtttaaaggatggtatggaaaaggatatatttcttgacatatgttgtt 3263877  T
Q  217 tctttatcggcaaggacag 235  Q
    ||||||||||||| |||||    
T  3263876 tctttatcggcaaagacag 3263858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 3268774 - 3268556
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    ||||| ||||||| ||||||| ||||| ||||||||| || |||||||||||||   ||  ||||||| |  |||||||| ||||||||| |||||  ||    
T  3268774 agttgtttactgtagaggattaccactggctcttgaagtcattggatcttacttgcgtgacaggacaatacaagaatggataagtgtattatcaaagtta 3268675  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    |||||||| ||  ||||  |||| || ||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||| ||    
T  3268674 gagagaatacccgatgataaagtgcatgagaaactaagaataagctatgatggtttaaagaatgatacagaaaaggatatatttcttgacatatgttgtt 3268575  T
Q  217 tctttatcggcaaggacag 235  Q
    ||||||| || ||||||||    
T  3268574 tctttattggtaaggacag 3268556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 3313379 - 3313594
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    |||||| || ||||| ||| ||||||| ||||||||| |||||||||||||||| |     |||| ||||  ||| |||   |||||||| ||||| |||    
T  3313379 agttgcctattgtggtggactgccactagctcttgaagtccttggatcttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagcta 3313478  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    || |  || |||||||| ||| |||| |||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||  | |||| ||    
T  3313479 gaaaagatacctaatgatcaaatacatgagaaactaaaaataagctttgacggtttaagggatcatatggaaaaggatatatttcttgatgtgtgttgtt 3313578  T
Q  217 tctttatcggcaagga 232  Q
    |||||||||| |||||    
T  3313579 tctttatcggtaagga 3313594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 3287927 - 3287785
Alignment:
Q  93 tggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaagg 192  Q
    |||| ||||||||| ||||| | | ||| |||||| ||| | ||| | ||||| ||||| |||||||||||||| || |||||  | |||||||||||||    
T  3287927 tggataagtgtattctcaaatccaaagacaattcccaatcatcaaatccaagaaaaactgagaataagctatgatgggttaaatcaagatatggaaaagg 3287828  T
Q  193 atatatttcttgacatatgttttttctttatcggcaaggacag 235  Q
    |||||||||||||||| |||| ||||||||| || ||||||||    
T  3287827 atatatttcttgacatttgttgtttctttattggtaaggacag 3287785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 13786167 - 13786373
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    ||||||||| ||||||||||| ||||| |||||||||||| |||| |||   ||| ||   |||||||||  |||||||| ||||||| |||||||| |     
T  13786167 agttgcttattgtggaggattaccactggctcttgaaatcattgggtctatgttacattacaggacaaaacaagaatggagaagtgtactgtcaaaattt 13786266  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    |||| ||||||  || | | | | ||  ||| ||| | |||||| ||||| ||||||| ||||||||||| ||||| | |||||||||||||||||| ||    
T  13786267 gagaaaattccccattatctaatgcagcagatactgaaaataagttatgatggtttaatggatgatatggtaaaggctgtatttcttgacatatgttgtt 13786366  T
Q  217 tctttat 223  Q
    |||||||    
T  13786367 tctttat 13786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 31174381 - 31174583
Alignment:
Q  18 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 117  Q
    |||||||| || |||||||| ||| | ||||||||| ||||||||  ||||||||     |||| ||||  |||||||| ||||| | | |||||| |||    
T  31174381 gttgcttattgcggaggattaccattggctcttgaagtccttggaagttacttatcaatgaggaaaaaactagaatggaaaagtgcactatcaaaattag 31174480  T
Q  118 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 217  Q
    ||| |||||| ||  | ||||| ||| ||||||| ||||| ||||| ||||| ||| | ||| |||  |||||||||||||||||||||||||||| |||    
T  31174481 agaaaattcccaacaatcaagtgcaacagaaactgagaatcagctacgacggcttagaagattatactgaaaaggatatatttcttgacatatgttgttt 31174580  T
Q  218 ctt 220  Q
    |||    
T  31174581 ctt 31174583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 3393134 - 3392919
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatgga-aggacaaaaagagaatggacaagtgtattgtcaaaact 115  Q
    |||||| || ||||| ||| | ||||| ||||||||| |||||||||||||||||| || | |||| ||||  ||| |||   |||||||| ||||| ||    
T  3393134 agttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttat-tgaagaggagaaaacaagagtggcagagtgtattatcaaagct 3393036  T
Q  116 agagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttt 215  Q
     || | ||| || ||||| ||| |||| |||||||||| ||| |||| | | |||||||  |||  ||||||||||||||||||||||||  | |||| |    
T  3393035 tgaaaaaatacccaatgatcaaatacatgagaaactaaaaattagctttaatggtttaagcgatcgtatggaaaaggatatatttcttgatgtctgttgt 3392936  T
Q  216 ttctttatcggcaagga 232  Q
    |||||||||||||||||    
T  3392935 ttctttatcggcaagga 3392919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 3362749 - 3362964
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    |||||| || ||||| ||| | ||||| ||||||||| |||||||||||||||| |     |||| ||||  ||| |||   |||||||| ||||| |||    
T  3362749 agttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttgttcaagaggaaaaaacaagagtggcggagtgtattatcaaagcta 3362848  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    || |  || || ||||| ||| |||| |||| ||||| |||||||| ||| ||||||||||||  |||||||||| |||||||||||||  | || | ||    
T  3362849 gaaaagatacccaatgatcaaatacacgagatactaaaaataagctttgatggtttaaaggatcgtatggaaaagaatatatttcttgatgtctgctgtt 3362948  T
Q  217 tctttatcggcaagga 232  Q
    |||||||||| |||||    
T  3362949 tctttatcggtaagga 3362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 3400168 - 3399965
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    ||||| ||| || |||||||| ||||| ||||||||| ||||||||  ||||||||     |||||||   ||||||||| ||||| | | |||||| ||    
T  3400168 agttggttattgcggaggattaccactggctcttgaagtccttggaagttacttatcaaagaggacaacccgagaatggagaagtgcactatcaaaatta 3400069  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
    |||| |||||| ||  |  |||| ||| ||| | | ||||| |||||||| |||||| | ||| |||   ||||||| ||||||||||||||||||| ||    
T  3400068 gagaaaattcccaacaatgaagtgcaacagatattgagaatcagctatgatggtttacaagattatacacaaaaggacatatttcttgacatatgttgtt 3399969  T
Q  217 tctt 220  Q
    ||||    
T  3399968 tctt 3399965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 14768466 - 14768242
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta 116  Q
    ||||||||| ||||||||||||||| | ||||||||| || ||||||||||||||||||| |||||||||  |||||||  ||||||| |||||||| ||    
T  14768466 agttgcttattgtggaggattgccattggctcttgaagtcattggatcttacttatatgggaggacaaaaccagaatgggaaagtgtactgtcaaaatta 14768367  T
Q  117 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 216  Q
     |||||||||| ||||| ||||| ||  ||||||| || ||||||||  | |||||| |||||||| |  ||||||||||||||||||||||||||||||    
T  14768366 aagagaattcccaatgatcaagtgcatcagaaactgagtataagctacaatggtttagaggatgatttaaaaaaggatatatttcttgacatatgttttt 14768267  T
Q  217 tctttatcggcaaggacagggccta 241  Q
    ||||||| |||||||| || |||||    
T  14768266 tctttattggcaaggatagagccta 14768242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 30416505 - 30416693
Alignment:
Q  60 ggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataa 159  Q
    |||||||| |||||||| ||||||| |  |||||||||||||||  | ||||||||||||| ||||||| |  | || || |||||||||||||||||||    
T  30416505 ggatcttatttatatggcaggacaagagaagaatggacaagtgtgctatcaaaactagagataattcctgaccatcatgtgcaagagaaactaagaataa 30416604  T
Q  160 gctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgctact 248  Q
    |||| || ||| |||  |||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||    
T  30416605 gctacgatggtctaagtgatggtaagcaaaaggatatatttcttgacatatgttgtttctttatcggcaaggacagagcttatgttact 30416693  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 15801625 - 15801728
Alignment:
Q  129 aatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggca 228  Q
    ||||| ||| |||| |||||||||| |||||||| ||| |||||| ||||| ||||||||||| |||||||||||||  | |||| |||||||||||| |    
T  15801625 aatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggta 15801724  T
Q  229 agga 232  Q
    ||||    
T  15801725 agga 15801728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 12596389 - 12596476
Alignment:
Q  145 agaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaagga 232  Q
    ||||||||| |||||| |  || ||||||| ||||  |||||||||||||||||||||||| || |||| |||||||||||| |||||    
T  12596389 agaaactaaaaataagtttcgaaggtttaagggatcgtatggaaaaggatatatttcttgatatttgttgtttctttatcggtaagga 12596476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 20810772 - 20810839
Alignment:
Q  153 agaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctt 220  Q
    ||||| |||||||| |||||| | ||| ||| | ||||||| ||||||||||||||||||| ||||||    
T  20810772 agaatcagctatgatggtttagaagattatacgcaaaaggacatatttcttgacatatgttgtttctt 20810839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 7798 - 7587
Alignment:
Q  23 ttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagaga 122  Q
    |||||||||||| ||||| || ||||||||||| || |||||| |||||| || |||||||||   |||||||| ||||||  | |||||| |||| | |    
T  7798 ttactgtggagggttgcccctagctcttgaaattctcggatctcacttatttgaaaggacaaaggaagaatggaaaagtgtgctatcaaaattagaaaaa 7699  T
Q  123 attcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttcttta 222  Q
    |||||  ||||  |||| ||||||||||| |||||||||||||| ||||| |  || || | | |||||| ||||||||||||  |||||| ||||||||    
T  7698 attccccatgaagaagtgcaagagaaactgagaataagctatgatggtttgacagaagacacgaaaaaggctatatttcttgatgtatgttgtttcttta 7599  T
Q  223 tcggcaaggaca 234  Q
    ||||||||||||    
T  7598 tcggcaaggaca 7587  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 8373263 - 8373075
Alignment:
Q  32 aggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagagaattcctaat 131  Q
    |||||| ||||| ||||||||| |||||||||||||||||| |   |||||| ||  |||||||| ||||| ||| |||||| ||  || |||||| ||     
T  8373263 aggattaccactagctcttgaagtccttggatcttacttatctaagaggacagaacaagaatggagaagtgcattatcaaaattaacgaaaattcccaac 8373164  T
Q  132 gaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctt 220  Q
     || |||| | | ||| | | ||||| |||||||| |||||| | ||| |||  |||||||||||||||||||||||||||| ||||||    
T  8373163 aacgaagtgctacagatattgagaatcagctatgatggtttagaagattatacagaaaaggatatatttcttgacatatgttgtttctt 8373075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 36215445 - 36215342
Alignment:
Q  120 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct 219  Q
    |||||||| ||||||||||||||| ||||  ||| ||| |||||||| ||| |||| ||||| | ||| || || ||||| |||||||||  || |||||    
T  36215445 agaattcccaatgaccaagtacaaaagaagttaaaaatgagctatgaaggtctaaatgatgacacggagaaagaaatattccttgacatagcttgtttct 36215346  T
Q  220 ttat 223  Q
    ||||    
T  36215345 ttat 36215342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 5356169 - 5356066
Alignment:
Q  120 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct 219  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||||| |||||||| ||||||   || || || |||||||||||||||  || |||||    
T  5356169 agaattcctaacaaccaagtacaaaagaaactaaaaataagctatgatggtttaaatgatgatgccgagaaagaaatatttcttgacatagcttgtttct 5356070  T
Q  220 ttat 223  Q
    ||||    
T  5356069 ttat 5356066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 5068658 - 5068524
Alignment:
Q  89 agaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaa 188  Q
    |||||||| ||||||||||   |||||  | |||||||||||| | |||||||| |||||  |||||||||||||||| | |||||| |||||||  ||     
T  5068658 agaatggaaaagtgtattggacaaactcaaaagaattcctaataatcaagtacaggagaagttaagaataagctatgatgctttaaatgatgatactgag 5068559  T
Q  189 aaggatatatttcttgacatatgttttttctttat 223  Q
    || || ||||| |||||||||  || |||||||||    
T  5068558 aaagaaatattccttgacatagcttgtttctttat 5068524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 5424171 - 5424305
Alignment:
Q  89 agaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaa 188  Q
    |||||||| ||||| ||||  ||||||  | |||||||||||| | |||||||| |||||  |||||||||||||||| | |||||| |||||||  ||     
T  5424171 agaatggaaaagtgcattggaaaaactcaaaagaattcctaataatcaagtacaggagaagttaagaataagctatgatgctttaaatgatgatactgag 5424270  T
Q  189 aaggatatatttcttgacatatgttttttctttat 223  Q
    || || ||||| |||||||||  || |||||||||    
T  5424271 aaagaaatattccttgacatagcttgtttctttat 5424305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 5175306 - 5175377
Alignment:
Q  111 aaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgat 182  Q
    |||||||| ||||||||||||||| |||||||| ||||  ||| |||||||||||| |||||| | ||||||    
T  5175306 aaactagaaagaattcctaatgacaaagtacaaaagaagttaaaaataagctatgatggtttagacgatgat 5175377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 5277133 - 5277204
Alignment:
Q  111 aaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgat 182  Q
    |||||||| ||||||||||||||| |||||||| ||||  ||| |||||||||||| |||||| | ||||||    
T  5277133 aaactagaaagaattcctaatgacaaagtacaaaagaagttaaaaataagctatgatggtttagacgatgat 5277204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 5104425 - 5104364
Alignment:
Q  120 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatga 181  Q
    |||||||||||| | ||||||||| ||||  ||||||||||||| || |||||||| |||||    
T  5104425 agaattcctaataatcaagtacaaaagaagttaagaataagctacgatggtttaaatgatga 5104364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 5133458 - 5133369
Alignment:
Q  120 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacata 209  Q
    |||||||||||| | ||||||||| |||| |||| |||||||||||| | |||||| || ||||| || || || ||||| ||| |||||    
T  5133458 agaattcctaataatcaagtacaaaagaagctaaaaataagctatgatgctttaaatgaagatattgagaaagaaatattccttaacata 5133369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 6665720 - 6665764
Alignment:
Q  17 agttgcttactgtggaggattgccacttgctcttgaaatccttgg 61  Q
    ||||||||| ||||| |||||||| |||||||||||| |||||||    
T  6665720 agttgcttattgtgggggattgcctcttgctcttgaactccttgg 6665764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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