View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_high_19 (Length: 228)
Name: NF19866_high_19
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 10048481 - 10048693
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgagctgacaaaaccacaattgtgagataaataataaccttgcatgtatcatcaa |
112 |
Q |
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| T |
10048481 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgagctgacaaaaccacaattgtgagataaataataaccttgcatgtatcatcaa |
10048580 |
T |
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| Q |
113 |
gaacaagaataaaagaaagagaaatttcattaggagtat------------aaagggaaataattggtggagacaaa---gcctgcaaactagatttcat |
197 |
Q |
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| T |
10048581 |
gaacaagaataaaagaaagagaaatttcattaggagtattaattattttagaaagggaaataattggtggacacaaagccgcctgcaaactagatttcat |
10048680 |
T |
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| Q |
198 |
taatgtatggtcc |
210 |
Q |
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||||||||||||| |
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| T |
10048681 |
taatgtatggtcc |
10048693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 10872479 - 10872383
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgagctgacaaaaccacaattgtgagataaataataaccttgcatgtatcatcaa |
112 |
Q |
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| T |
10872479 |
atgaaatacaacagatcgaataaagatgtcaccaaagttgcttcatga---gacaataccacaattgtgaggta---aataaccatgcatgtatcatcaa |
10872386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 10877550 - 10877454
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgagctgacaaaaccacaattgtgagataaataataaccttgcatgtatcatcaa |
112 |
Q |
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| T |
10877550 |
atgaaatacaacagatcgaataaagatgtcaccaaagttgcttcatga---gacaataccacaattgtgaggta---aataaccatgcatgtatcatcaa |
10877457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 10882621 - 10882525
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgagctgacaaaaccacaattgtgagataaataataaccttgcatgtatcatcaa |
112 |
Q |
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| T |
10882621 |
atgaaatacaacagatcgaataaagatgtcaccaaagttgcttcatga---gacaataccacaattgtgaggta---aataaccatgcatgtatcatcaa |
10882528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 39677527 - 39677575
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgag |
61 |
Q |
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| T |
39677527 |
atgaaatacaacagatctaataaagatgtcaccaaagttgcttcatgag |
39677575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 10867833 - 10867881
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgag |
61 |
Q |
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||||||||||| ||||| | ||||||||||||||||||| ||||||||| |
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| T |
10867833 |
atgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
10867881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 10886536 - 10886488
Alignment:
| Q |
13 |
atgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgag |
61 |
Q |
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||||||||||| ||||| | ||||||||||||||||||| ||||||||| |
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| T |
10886536 |
atgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
10886488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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