View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19866_high_2 (Length: 550)
Name: NF19866_high_2
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 53424832 - 53424378
Alignment:
| Q |
1 |
gaggctgtcaagacaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
53424832 |
gaggctgtcaagacaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataa |
53424733 |
T |
|
| Q |
101 |
ttaatcnnnnnnn-ttattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatgg |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424732 |
ttaatcaaaaaaaattattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatgg |
53424633 |
T |
|
| Q |
200 |
catagatgatggttacacaatctatgacaagattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424632 |
catagatgatggttacacaatctatgacaagattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggca |
53424533 |
T |
|
| Q |
300 |
agaaattatgatttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaa |
399 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424532 |
agaaattatgacttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaa |
53424433 |
T |
|
| Q |
400 |
tttaatttacggtatatcaagaagattaatggatatacaccatcaatataaagtt |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424432 |
tttaatttacggtatatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 141 - 384
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
| Q |
141 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa |
237 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||| | || |||| ||||||| |
|
|
| T |
53431843 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa |
53431744 |
T |
|
| Q |
238 |
tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac |
334 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| || |||| | | | | |||| || ||||||||||| ||||||||| | |
|
|
| T |
53431743 |
cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc |
53431644 |
T |
|
| Q |
335 |
aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
384 |
Q |
| |
|
|||||||| ||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
53431643 |
aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 445 - 537
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
| Q |
445 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
53424066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 140 - 398
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
| Q |
140 |
gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg |
239 |
Q |
| |
|
|||||| |||| ||||||||||| ||| ||||| ||||||| |||||||| || ||||| |||||| || ||| ||| | |||| || |||| | | |
|
|
| T |
48373873 |
gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg |
48373972 |
T |
|
| Q |
240 |
gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa |
336 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| || |||| | ||||| | ||||| | ||||||||||| ||||||||| ||| |
|
|
| T |
48373973 |
gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa |
48374072 |
T |
|
| Q |
337 |
aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
398 |
Q |
| |
|
|||||| || |||| ||||| |||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
48374073 |
aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
| Q |
147 |
ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg |
198 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26096577 |
ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
349 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
394 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University