View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19866_high_7 (Length: 384)
Name: NF19866_high_7
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 48693871 - 48693505
Alignment:
| Q |
1 |
tagttgtaacttcatctatgattgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48693871 |
tagttgtaacttcatctatgattgatacttcttctaacacatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatc |
48693772 |
T |
|
| Q |
101 |
ttctggccacattgaaggaaggacttcaatttccataatatcctcaacacactctttttccataatatcttctattctatactacacaactttgtgatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48693771 |
ttctggccacattgaaggaaggacttcaatttccataatatcctcaacacactctttttccataatatcttctattctatactacacaactttgtgatat |
48693672 |
T |
|
| Q |
201 |
caattcttttcaagaagtactagtccaaatttcaatatgtctctgaaacaaaatagaagtcaaatatgtgaaaaattcaattgcaagttatcaaggtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48693671 |
caattcttttcaagaagtactagtccaaatttcaatatgtctctgaaacaaaatagaagtcaaatatgtgaaaaattcaattgcaagttatcaaggtgat |
48693572 |
T |
|
| Q |
301 |
tttcaacattcagaaaccaaaattaagggctaaaaaatctcaatgaagaagcataggaattaaaaac |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48693571 |
tttcaacattcagaaaccaaaattaagggctaaaaaatctcaatgaagaagcataggaattaaaaac |
48693505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 3456962 - 3457064
Alignment:
| Q |
15 |
tctatgattgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattg |
114 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||||| ||||||| |||||||| ||||| || ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3456962 |
tctaagattgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacattg |
3457061 |
T |
|
| Q |
115 |
aag |
117 |
Q |
| |
|
||| |
|
|
| T |
3457062 |
aag |
3457064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University