View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_1 (Length: 595)
Name: NF19866_low_1
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 114 - 449
Target Start/End: Original strand, 1108535 - 1108866
Alignment:
| Q |
114 |
gctctaactcttatttggtttctaatttggtttgtatgatctagactgagacaaaattatggcgaaaagtatatgcttaagggatgaagaaaagtatgat |
213 |
Q |
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| T |
1108535 |
gctctaactcttatttggtttctaatttggtttgtatgatctagactgagacaaaattatggcgaaaagtatatgcttaagggatgaagaaaattatgat |
1108634 |
T |
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| Q |
214 |
atagcattaaaattgttttcttgtgttgatcaatttgcgttacgtatcaaggaggacttgattaattagattaagttcttaattagttgattcagattta |
313 |
Q |
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| T |
1108635 |
atagcattaaaattgttttcttgtgttgatcaatttgcgttacgtatcaaggaggacatgattaattagattaagttcttaattagttgattcagattta |
1108734 |
T |
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| Q |
314 |
aaggaatttagagtattagttttgtaattcaaataaacaataagtggttagtttgtttgtttcttaagctacaagttagctaataagttgagaaaagtta |
413 |
Q |
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| T |
1108735 |
aaggaatttagagtattagttttgtaattc----aaacaataagtggttagttagtttgtttcttaagctacaagttagctaataagttgagaaaagtta |
1108830 |
T |
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| Q |
414 |
gttatagattaacttgattacggggttacttgatag |
449 |
Q |
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| T |
1108831 |
gtgatagattaacttgattacagggttacttgatag |
1108866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 517 - 589
Target Start/End: Original strand, 1108876 - 1108948
Alignment:
| Q |
517 |
tttgattttctctattcaatgagattcacatagttttttatattctcttattcttctaaatatttcatctcac |
589 |
Q |
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| T |
1108876 |
tttgatcttctctattcaatgagattcacatagttttttatattctcttattcttctaaatatttcatctcac |
1108948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 1108465 - 1108528
Alignment:
| Q |
11 |
catatatgattttg-gaagaagggtttgaaggagaatgctggaactgttatttgattccaagaa |
73 |
Q |
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| T |
1108465 |
catatatgattatgtgaagaagggtttgaaggaaaatgctggaactgttatttgattccaagaa |
1108528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 553
Target Start/End: Original strand, 33830234 - 33830300
Alignment:
| Q |
487 |
tatatatatagggttaatgcactttgtaaatttgattttctctattcaatgagattcacatagtttt |
553 |
Q |
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| T |
33830234 |
tatatatatagggttaatgcactttgtattttgcatcttctccattcaataagatttacacagtttt |
33830300 |
T |
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