View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_10 (Length: 344)
Name: NF19866_low_10
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 36370362 - 36370704
Alignment:
| Q |
1 |
tctaataccatggagaaaaaaggccacatttcagtacaaattatattacaattactaagattgcagtagaaccctttgagtaacctgtcacaaataattt |
100 |
Q |
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| T |
36370362 |
tctaataccatggagaaaaaaggccacatttgagtacaaattatattacaattactaagattgcagtagaaccctttgattaacttgtcacaaataattt |
36370461 |
T |
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| Q |
101 |
aaccacaagtgaaaccatcatcaagactattgctagcaccatcaacatttactttaaacaaagtttattaacgaaatgggggtgggagaatgaatgattt |
200 |
Q |
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| T |
36370462 |
aaccaaaagtgaaaccatcatcaagactattgctagcaccatctacatttactttaaacaaaatttattaacgaaatgggg-tgggagaatgaatgattt |
36370560 |
T |
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| Q |
201 |
cggatcatttgaaagtgaagcccaagcccaaagaggaggagataaactatcactttccttccttcattcgttcgtttggcactttccttctctccttttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36370561 |
cggatcatttgaaagtgaagcccaagcccaaagaggaggagataaactatcactttccttccttcattcgtccgtttggcactttccttctctccttttc |
36370660 |
T |
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| Q |
301 |
tcgtgacttccttcacagcgctctccgacaatacaaaacgcatt |
344 |
Q |
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| T |
36370661 |
tcgtgacttccttcacagcgctctccgacaatacaaaacgcatt |
36370704 |
T |
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