View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_11 (Length: 343)
Name: NF19866_low_11
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 46670173 - 46670499
Alignment:
| Q |
1 |
aggagtagattttgcgtgaatggtgcatcattgcatttggtagaactttattatctaatattnnnnnnnntataaatgttaacatgtgtctttagaatac |
100 |
Q |
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| T |
46670173 |
aggagtagattttgcatgaatggtgtatcattgcatttggtagaactttattatctaatattaaaaaaa-tataaatgttaacatgtgtctttagaacac |
46670271 |
T |
|
| Q |
101 |
gtgttaatgttaatgatctacatataataattctacctcaaatt----gtatttaaattcttaaaaatacaaatattgttcttttcaatataaaattgct |
196 |
Q |
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| T |
46670272 |
gtgttaatgttaatgatctacatataataattctgcctcaaatttcatgtatttaaattcttaaaaatacaaatattgttcttttcaatataaaattgct |
46670371 |
T |
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| Q |
197 |
gcatgtaagttcctcaacatgtatctaagtgttagagcacaagctagtaagcgccattaaaaaatgatcttgcatggttcaccgcttagatcacttgtgc |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46670372 |
gcatgtaagttcctcaacatgtgtctaagtgttagagcacaagctagtaagcgccattaaaaaatgatcttgcatggtacaccgcttagatcacttgtgc |
46670471 |
T |
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| Q |
297 |
acgttagaacaagctgagtatatcaggt |
324 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
46670472 |
acgttagaacaagctgagtatatcaggt |
46670499 |
T |
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