View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19866_low_12 (Length: 342)

Name: NF19866_low_12
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19866_low_12
NF19866_low_12
[»] chr4 (12 HSPs)
chr4 (19-342)||(8952670-8952993)
chr4 (21-335)||(8975761-8976075)
chr4 (24-342)||(9027516-9027834)
chr4 (21-342)||(8971967-8972288)
chr4 (24-315)||(9002056-9002347)
chr4 (19-315)||(8930066-8930362)
chr4 (19-116)||(8916425-8916522)
chr4 (24-116)||(8905581-8905673)
chr4 (274-315)||(8905379-8905420)
chr4 (188-221)||(8905473-8905506)
chr4 (274-315)||(8916223-8916264)
chr4 (188-221)||(8916317-8916350)
[»] chr5 (3 HSPs)
chr5 (24-312)||(9401074-9401362)
chr5 (188-315)||(20075419-20075546)
chr5 (18-95)||(20075639-20075716)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 8952670 - 8952993
Alignment:
Q  19 gctgattcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatg 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8952670 gctgattcttcaagtgttacaaatttgagtgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatg 8952769  T
Q  119 aaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||    
T  8952770 aaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagctttttttctgattatattccattcacgggatggattga 8952869  T
Q  219 taagctcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaatagagag 318  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  8952870 taagctcagaggattgcatggtcgtgttgatagaaatttcaaggagtttgatgaattttatcaagagattattgatgaacatttggatccaaatagagaa 8952969  T
Q  319 caaattactgatgaagaggatatt 342  Q
    || ||||| |||||||||||||||    
T  8952970 catattacagatgaagaggatatt 8952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 8975761 - 8976075
Alignment:
Q  21 tgattcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatgaa 120  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| ||||| | |    
T  8975761 tgattcttcaagtgttacaaatttgagtgagttattgatttcgctatcaagtactataatttgtaggattgcttttgggagaagctatgaggatgaagga 8975860  T
Q  121 attgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattgata 220  Q
    | ||| |  ||||||||||||||| |||||||||||||||||||||| ||||||  ||         |||||||||||||||||| | ||||||||||||    
T  8975861 actgaaagaagtaggtttcatggaatgttgcatgagtttcaagctttacttgcagaaatatttgtttctgattatattccattcatgagttggattgata 8975960  T
Q  221 agctcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaatagagagca 320  Q
    | || || ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8975961 aacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgaattttatcaagagattattgatgaacatttggatccaaatagagaaca 8976060  T
Q  321 aattactgatgaaga 335  Q
    |||||| ||||||||    
T  8976061 aattacagatgaaga 8976075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 9027516 - 9027834
Alignment:
Q  24 ttcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatgaaatt 123  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| ||||| | || |    
T  9027516 ttcttcaagtgttacaaatttgagtgagttattgatttcgctatcaagtactataatttgtaggattgcttttgggagaagctatgaggatgaaggaact 9027615  T
Q  124 gagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattgataagc 223  Q
    || |  ||||||||||||||| |||||||||||||||||||||| ||||||  ||         ||||||||||||| |||| | ||||||||||||| |    
T  9027616 gaaagaagtaggtttcatggaatgttgcatgagtttcaagctttacttgcagaaatatttgtttctgattatattcccttcatgagttggattgataaac 9027715  T
Q  224 tcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaatagagagcaaat 323  Q
    | || ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  9027716 ttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgaattttatcaagagattattgatgtacatttggatccaaatagagaacaaat 9027815  T
Q  324 tactgatgaagaggatatt 342  Q
    ||| |||||||| ||||||    
T  9027816 tacagatgaagaagatatt 9027834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 8972288 - 8971967
Alignment:
Q  21 tgattcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatgaa 120  Q
    ||||||||||||||||||||||||||| ||| | |||||||| || |||||||||||||||||||| ||||||||||||| |||||||||  |||||| |    
T  8972288 tgattcttcaagtgttacaaatttgagtgaggtgttgatttctctatcaagtactataatttgtaggattgcttttgggagaagctatgagaatgatgga 8972189  T
Q  121 attgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattgata 220  Q
    | |||||| ||||| ||||||| | |||||||||||||||||||||||||||||  |           ||||||||||||||  | ||||||| ||||||    
T  8972188 actgagaaaagtagatttcatgaaatgttgcatgagtttcaagctttgcttgcagaattttttgtttgtgattatattccatatatgggttggcttgata 8972089  T
Q  221 agctcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaatagagagca 320  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  8972088 agcttagaggattgcatggtcgtgttgataaaaatttcaaggagtttgatgaattttatcaagagattattgatgagcatttggatccaaatagagaaca 8971989  T
Q  321 aattactgatgaagaggatatt 342  Q
    |||||  |||||||| ||||||    
T  8971988 aattaaagatgaagaagatatt 8971967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 315
Target Start/End: Complemental strand, 9002347 - 9002056
Alignment:
Q  24 ttcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatgaaatt 123  Q
    ||||||||||||| ||||| |||| ||| ||||||| || || |||||||| |||||||| || |||| |||||||| ||||||||||||||| | || |    
T  9002347 ttcttcaagtgtttcaaatatgagtgagatattgatatctctttcaagtacgataatttgcaggattgtttttgggagaagctatgaagatgaaggaact 9002248  T
Q  124 gagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattgataagc 223  Q
    ||||  ||||||||||| ||| |||| ||||||| |||||||||||| |||  ||         |||||||||||||||||| | ||||||||||||| |    
T  9002247 gagagaagtaggtttcaaggaatgtttcatgagtgtcaagctttgctggcagaaatatttgtttctgattatattccattcatgagttggattgataaac 9002148  T
Q  224 tcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaataga 315  Q
    | || ||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  9002147 ttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgatttttatcaagagattatagatgaacatttggatccaaataga 9002056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 8930362 - 8930066
Alignment:
Q  19 gctgattcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatg 118  Q
    |||| |||||||| ||||||||||||||| ||| |||||| ||| || |  ||||| || |||||||| |||||||||||||| || || || ||  | |    
T  8930362 gctgcttcttcaaatgttacaaatttgagtgagatattgacttctctatatagtacaatgatttgtaggattgcttttgggaagaggtacgaggaacaag 8930263  T
Q  119 aaattgagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattga 218  Q
      ||||||| |||||  || |||||| |||||||||||||| | || ||| |  || |   |       ||||||||||| |||||| | ||||||||||    
T  8930262 ggattgagaggagtaaattccatggaatgttgcatgagtttgaggccttgatgacagctttctttgtttctgattatattacattcatgagttggattga 8930163  T
Q  219 taagctcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaataga 315  Q
    ||| || || ||||||||||||||| ||||||||| |||||||||| | |||  |||||| |||||| |||||||||||||||||||||||||||||    
T  8930162 taaacttaggggattgcatggtcgtcttgatagaaatttcaaggagatggatgcattttaccaagaggttattgatgaacatttggatccaaataga 8930066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 8916522 - 8916425
Alignment:
Q  19 gctgattcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatga 116  Q
    |||| |||||||| ||||||||||||||| ||| |||||| ||| ||||| ||||| ||||||||||| |||||||| || |  || |||||||||||    
T  8916522 gctgcttcttcaattgttacaaatttgagtgagatattgacttctctctctagtacaataatttgtaggattgctttcggtaggagttatgaagatga 8916425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 8905673 - 8905581
Alignment:
Q  24 ttcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatga 116  Q
    |||||||| ||||||||||||||| ||| |||||| ||| ||||| ||||| ||||||||||| |||||||| || |  || |||||||||||    
T  8905673 ttcttcaaatgttacaaatttgagtgagatattgacttctctctctagtacaataatttgtaggattgctttcggtaggagttatgaagatga 8905581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 8905420 - 8905379
Alignment:
Q  274 ttttatcaagagattattgatgaacatttggatccaaataga 315  Q
    ||||| || ||| |||||||||||||||||||||||||||||    
T  8905420 ttttaccaggaggttattgatgaacatttggatccaaataga 8905379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 8905506 - 8905473
Alignment:
Q  188 ctgattatattccattcacgggttggattgataa 221  Q
    |||||||||||||||| |||||||||||||||||    
T  8905506 ctgattatattccatttacgggttggattgataa 8905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 8916264 - 8916223
Alignment:
Q  274 ttttatcaagagattattgatgaacatttggatccaaataga 315  Q
    ||||| || ||| |||||||||||||||||||||||||||||    
T  8916264 ttttaccaggaggttattgatgaacatttggatccaaataga 8916223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 8916350 - 8916317
Alignment:
Q  188 ctgattatattccattcacgggttggattgataa 221  Q
    |||||||||||||||| |||||||||||||||||    
T  8916350 ctgattatattccatttacgggttggattgataa 8916317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 9401362 - 9401074
Alignment:
Q  24 ttcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttttgggaaaagctatgaagatgatgaaatt 123  Q
    |||||||  ||||||||||||||| || ||||| ||||| ||||||||||  |||||||||||  ||||||||||||  || ||||||||||| | | |     
T  9401362 ttcttcagttgttacaaatttgagtgaattattaatttctctctcaagtaaaataatttgtagggttgcttttgggaggaggtatgaagatgaaggacta 9401263  T
Q  124 gagaagagtaggtttcatggattgttgcatgagtttcaagctttgcttgcaacaagcnnnnnnnctgattatattccattcacgggttggattgataagc 223  Q
    ||||  ||||  || |||||| |||||||||||||| | ||  || |  || |   |       |||||||||||||||| | ||||||||||||||| |    
T  9401262 gagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatattccatttatgggttggattgataaac 9401163  T
Q  224 tcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagattattgatgaacatttggatccaaat 312  Q
    | ||||| |||||||||||| ||||||||| |||||| ||||||||| |||| || ||||| |||||||||||||||||||||||||||    
T  9401162 taagagggttgcatggtcgtcttgatagaaatttcaaagagtttgatgaattctaccaagaaattattgatgaacatttggatccaaat 9401074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 20075546 - 20075419
Alignment:
Q  188 ctgattatattccattcacgggttggattgataagctcagaggattgcatggtcgtgttgatagaagtttcaaggagtttgataaattttatcaagagat 287  Q
    |||||||||||||||||||||||||||||||||| ||    ||| | | ||  ||| | ||  ||| ||| |||||| | ||| | ||||| |||||| |    
T  20075546 ctgattatattccattcacgggttggattgataaactatctggacttcgtgcgcgtctcgaacgaaattttaaggagatggatgagttttaccaagaggt 20075447  T
Q  288 tattgatgaacatttggatccaaataga 315  Q
    ||||||||||||||||||||||||||||    
T  20075446 tattgatgaacatttggatccaaataga 20075419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 20075716 - 20075639
Alignment:
Q  18 agctgattcttcaagtgttacaaatttgagcgagttattgatttcactctcaagtactataatttgtagaattgcttt 95  Q
    ||||| |||||||| ||||||||||||||| ||| |||| | ||| || || ||||| ||||||||||| ||||||||    
T  20075716 agctgcttcttcaattgttacaaatttgagtgagatattaacttctctttccagtacaataatttgtaggattgcttt 20075639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University