View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19866_low_16 (Length: 294)
Name: NF19866_low_16
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_16 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 18148 - 17877
Alignment:
| Q |
7 |
aaaatattaaagagattagcaatataatatagtaactcaagcataataataaagatgcagaaaactgtttatctatcaacctaataattaatgtcttacc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18148 |
aaaatattaaagagattagcaatataatatagtaattcaagcataataataaagatgcagaaaactgtttatctatcaacctaataattaatgtcttacc |
18049 |
T |
|
| Q |
107 |
acttttatattttgtataatattaaagcttctattagataggtcgacactccacgagcccttatgcatgcatacctcataccgttactttagaagattca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18048 |
acttttatattttgtataatattaaagcttctattagataggtcgacactccacgagcccttatgcatgcatacctcataccgttactttagaagattca |
17949 |
T |
|
| Q |
207 |
attgtttataaattgagagaaatatatatatttagagatgaattttaaagaaaatccaaccataaatctatt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17948 |
attgtttataaattgagagaaatatatatatttagagatgaattttaaagaaaatccaaccataaatctatt |
17877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 28054069 - 28054019
Alignment:
| Q |
166 |
cttatgcatgcatacctcataccgttactttagaagattcaattgtttata |
216 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
28054069 |
cttatgcatgcatacctcttaccgctactttagaagattcaattgtttata |
28054019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 28064494 - 28064444
Alignment:
| Q |
166 |
cttatgcatgcatacctcataccgttactttagaagattcaattgtttata |
216 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
28064494 |
cttatgcatgcatacctcttaccgctactttagaagattcaattgtttata |
28064444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 28082326 - 28082276
Alignment:
| Q |
166 |
cttatgcatgcatacctcataccgttactttagaagattcaattgtttata |
216 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||||||||||| |||||| |
|
|
| T |
28082326 |
cttatgcatgcatacctgatatcgctactttagaagattcaattctttata |
28082276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 28159940 - 28159888
Alignment:
| Q |
7 |
aaaatattaaagagattagcaatataatatagtaactcaagcataataataaa |
59 |
Q |
| |
|
|||||| || |||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
28159940 |
aaaataatatagagattaacatcattatatagtaactcaagcataataataaa |
28159888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 28184492 - 28184440
Alignment:
| Q |
7 |
aaaatattaaagagattagcaatataatatagtaactcaagcataataataaa |
59 |
Q |
| |
|
|||||| || |||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
28184492 |
aaaataatatagagattaacatcattatatagtaactcaagcataataataaa |
28184440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University