View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_18 (Length: 282)
Name: NF19866_low_18
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 8544356 - 8544092
Alignment:
| Q |
18 |
agatacataccagtggatcaggagattctaaacagtaattaaagataggaagaaaatgattggaggataatgagtggggggttgtattagcaaaatggag |
117 |
Q |
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| T |
8544356 |
agatacataccagtggatcaggagattgtaaacagtaattaaagataggaagaaaatgattggcggataatgagtggggggttgtattagcaaaatggag |
8544257 |
T |
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| Q |
118 |
cagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcattt------gcatagaggatcctggcgcagaagcaataaacata |
211 |
Q |
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| T |
8544256 |
cagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttgcatttgcatagaagatcctggcgcagaagcaataaacata |
8544157 |
T |
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| Q |
212 |
agttgaag----tgaatgaatgataaatagtgaaggaaggaaggagtattaaattaccttctgtg |
272 |
Q |
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| T |
8544156 |
agttgaagtgaatgaatgaatgataaatagtgaaggaatgaaggagtattaaattaccttctgtg |
8544092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 8609595 - 8609331
Alignment:
| Q |
18 |
agatacataccagtggatcaggagattctaaacagtaattaaagataggaagaaaatgattggaggataatgagtggggggttgtattagcaaaatggag |
117 |
Q |
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| T |
8609595 |
agatacataccagtggatcaggagattgtaaacagtaattaaagataggaagaaaatgattggcggataatgagtggggggttgtattagcaaaatggag |
8609496 |
T |
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| Q |
118 |
cagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcattt------gcatagaggatcctggcgcagaagcaataaacata |
211 |
Q |
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| T |
8609495 |
cagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttgcatttgcatagaagatcctggcgcagaagcaataaacata |
8609396 |
T |
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| Q |
212 |
agttgaag----tgaatgaatgataaatagtgaaggaaggaaggagtattaaattaccttctgtg |
272 |
Q |
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| T |
8609395 |
agttgaagtgaatgaatgaatgataaatagtgaaggaatgaaggagtattaaattaccttctgtg |
8609331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 25014599 - 25014527
Alignment:
| Q |
119 |
agtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttgcatagaggatcctg |
191 |
Q |
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| T |
25014599 |
agtaagtgggaagccttttttctctcaccggagtggagtgccttgactatttgcagttgcacagacgatcctg |
25014527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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