View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_20 (Length: 234)
Name: NF19866_low_20
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40657014 - 40656795
Alignment:
| Q |
1 |
gccctctccattattttcgtcgcaactacttcaatatcttgcaagtctccagacactgcacaagcagaaagaattgacctccaaatgtccgtggtagttt |
100 |
Q |
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| T |
40657014 |
gccctctccattatttttgtcgcaactacttcaatatcttgcaagtctccagacactgcacaagcagaaagaattgacctccaaatgtccgtggtagttt |
40656915 |
T |
|
| Q |
101 |
tatacggcatcttttccacgatgtcaacggcttctttgaggttaccagctctacataacatctccacaacatatgaataatgctcttcctctggttttac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40656914 |
tatacggcatcttttccacaatgtcaacggcttctttgaggttaccagctctacataacatctccacaacatatgaataatgttcttcctctggttttac |
40656815 |
T |
|
| Q |
201 |
tccaaattccatctccattt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40656814 |
tccaaattccatctccattt |
40656795 |
T |
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