View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_21 (Length: 232)
Name: NF19866_low_21
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_21 |
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| [»] scaffold1121 (1 HSPs) |
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| [»] scaffold0058 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 9903961 - 9903763
Alignment:
| Q |
20 |
gaaagtacttactcaagaactcaatcttgaatctctcccaggataccacttcaccaccggcctcaagtctcctcttagcacttgcgcaccaatacttagc |
119 |
Q |
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|||| ||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
9903961 |
gaaactacttcctcaagaactcaatcttgaatctcttctaggataccacttcaccaccagcctcaagtctcctcttaacacttgcgcaccaatacttagc |
9903862 |
T |
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| Q |
120 |
ctcttctgctagaatatgtgtagtcaacctcactctatgatcgttgttggtaaccatagcacaaaaaatccgctccacaccttgcatccatgtctgtgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9903861 |
ctcttctgctagaatatgtgtagtcaacctcactctatgatcgttaatggtaaccatagcacaaaaaatccgctccacaccttgcatccatgtttgtgc |
9903763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 20172897 - 20172982
Alignment:
| Q |
37 |
aactcaatcttgaatctctcccaggataccacttcaccaccggcctcaagtctcctcttagcacttgcgcaccaatacttagcctc |
122 |
Q |
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|||||| |||||||| ||||||| || |||||||| ||||||||||||||||| |||||||| || | |||||||||| |||||| |
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| T |
20172897 |
aactcactcttgaatttctcccaagacaccacttctccaccggcctcaagtcttctcttagctctagtccaccaatactcagcctc |
20172982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 19982284 - 19982083
Alignment:
| Q |
20 |
gaaagtacttactcaagaactcaatcttgaatctctcccaggataccacttcaccaccggcctcaagtctcctcttagcacttgcgcaccaatacttagc |
119 |
Q |
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|||||||||| |||| || ||| |||||||| | |||| || || ||||| ||||| ||||||||||||||||||| | || |||||||||| | | |
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| T |
19982284 |
gaaagtacttcctcataaattcactcttgaattttccccaagacacgacttctccaccagcctcaagtctcctcttagatccagcccaccaatactcatc |
19982185 |
T |
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| Q |
120 |
ctcttctgctagaatatgtgtagtcaacctcactctatgatcgttgttggtaaccatagcacaaaaaatccgctccacaccttgcatccatgtctgtgct |
219 |
Q |
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|||||| | | |||||||||| ||| || ||| | | | || |||||| ||||||||||| || ||| |||||||||||||||||| || |||||| |
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| T |
19982184 |
ctcttcgggaaacatatgtgtagccaatctaacttttttgtagtcgttggtcaccatagcacagaagttcctctccacaccttgcatccaggtttgtgct |
19982085 |
T |
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| Q |
220 |
cc |
221 |
Q |
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|| |
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| T |
19982084 |
cc |
19982083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1121 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1121
Description:
Target: scaffold1121; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 142 - 221
Alignment:
| Q |
140 |
tagtcaacctcactctatgatcgttgttggtaaccatagcac-aaaaaatccgctccacaccttgcatccatgtctgtgc |
218 |
Q |
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|||||||||| ||| | ||||||| | ||| ||||||||||| ||||||||| |||||||||||||||||| || ||||| |
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| T |
142 |
tagtcaaccttactttttgatcgtcgctggcaaccatagcacgaaaaaatcctctccacaccttgcatccaggtttgtgc |
221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0058 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0058
Description:
Target: scaffold0058; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 78184 - 78301
Alignment:
| Q |
20 |
gaaagtacttactcaagaactcaatcttgaatctctcccaggataccacttcaccaccggcctcaagtctcctcttagcacttgcgcaccaatacttagc |
119 |
Q |
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|||||||||| |||| |||||| |||||||| || || | || |||||||| ||||| ||||||||||| |||||| | || || |||||||||| | | |
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| T |
78184 |
gaaagtacttcctcagaaactcactcttgaatttcgcctaagacaccacttctccaccagcctcaagtcttctcttaactctagcccaccaatactcatc |
78283 |
T |
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| Q |
120 |
ctcttctgctagaatatg |
137 |
Q |
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||| ||||| || ||||| |
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| T |
78284 |
ctcctctgcaagcatatg |
78301 |
T |
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