View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_3 (Length: 534)
Name: NF19866_low_3
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 25934235 - 25933809
Alignment:
| Q |
1 |
atcttgacacacctccatgatgatcaaccacccacatctcattcttctcatcaaacccaccaacacttcttccacaatccttgttcttcttattcttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25934235 |
atcttgacacacctccatgatgatcaaccacccacatctcattcttctcatcaaacccaccaacacttctaccacaatccttgttcttcttattcttcct |
25934136 |
T |
|
| Q |
101 |
aaatagcttcccaattctccaaaaaccatgtctttttatatcaacacaactgctactacttctcttaagcaccacaacctcttcttcttctttctcctgc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934135 |
aaatagcttcccaattctccaaaaaccatgtctttttatatcaacacaactgctactacttctcttaagcaccacaacctcttcttcttctttctcctgc |
25934036 |
T |
|
| Q |
201 |
atcttgaccttaggattcaaatgctgaaatgggtttgggtttgtctcattcttttcattctcaataagaaatgaaactcttccaacacttcctacttcaa |
300 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
25934035 |
atcttgaccttagaattcaaatgctgaaatggatttgggtttgtctcattcttttcattctcaataagaaatgagactcttccaacacttcctacctcaa |
25933936 |
T |
|
| Q |
301 |
cagagcatgaatttcgattcgaagtgatctcatcagagcaagaataagaagaaagcctttgttctccacaatctgaacacacaagcttaaccaaacgttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25933935 |
cagagcatgaatttcgattcgaagtgatctcatcagagcaagaacaagaagaaagcctttgttctccacaatctgaacacacaagcttgaccaaacgttc |
25933836 |
T |
|
| Q |
401 |
tttaagacagtaagcacagattcctcc |
427 |
Q |
| |
|
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| T |
25933835 |
tttaagacagtaagcacagattcctcc |
25933809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 262 - 400
Target Start/End: Original strand, 16704110 - 16704248
Alignment:
| Q |
262 |
caataagaaatgaaactcttccaacacttcctacttcaacagagcatgaatttcgattcgaagtgatctcatcagagcaagaataagaagaaagcctttg |
361 |
Q |
| |
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||||||||||||| ||||| |||| ||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
16704110 |
caataagaaatgagactctgccaatacttcctacctcaacataacatgaatttcgattggaagtgatctcatcagagcaagaacaagaagaaagcctttg |
16704209 |
T |
|
| Q |
362 |
ttctccacaatctgaacacacaagcttaaccaaacgttc |
400 |
Q |
| |
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||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
16704210 |
ttccccacaatctgaacacactagcttgaccaaacgttc |
16704248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 25933785 - 25933713
Alignment:
| Q |
448 |
gatgcttcttacatggaagaaaatcagaagtagaatagtagcaatccatgtcattgctataagcttcaacacc |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933785 |
gatgcttcttacatggaagaaaatcagaagtagaatagtagcaatccatgtcattgctataagcttcaacacc |
25933713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 236 - 403
Target Start/End: Complemental strand, 14999793 - 14999626
Alignment:
| Q |
236 |
tgggtttgtctcattcttttcattctcaataagaaatgaaactcttccaacacttcctacttcaacagagcatgaatttcgattcgaagtgatctcatca |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||| | |||||||||||||||| ||||||||||||||| |
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| T |
14999793 |
tgggtttgtctcattcttttcattctcaataagaaatgagactctgccaatacttcctacctcaaaatagcatgaatttcgattggaagtgatctcatca |
14999694 |
T |
|
| Q |
336 |
gagcaagaataagaagaaagcctttgttctccacaatctgaacacacaagcttaaccaaacgttcttt |
403 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14999693 |
gagcaagaacaagaagaaagcctttgttccccacaatctgaacacacaagcttgaccaaacgttcttt |
14999626 |
T |
|
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