View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_4 (Length: 499)
Name: NF19866_low_4
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 12 - 481
Target Start/End: Original strand, 25934212 - 25934681
Alignment:
| Q |
12 |
atcatcatggaggtgtgtcaagatcaagatctctgtgcagtttcaggggtggagctatatttggatctgaagatggtggtgattcagttttatcaggtgc |
111 |
Q |
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| T |
25934212 |
atcatcatggaggtgtgtcaagatcaagatctctgtgcagtttcaggggtggagctatatttggatctgaagatggtggtgattcagttttatcaggtgc |
25934311 |
T |
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| Q |
112 |
tagaagctctatttctgcagctagaagttcaggtgtgaatggtggtttgatgctagaatctggtaggagaagtggttacagtgaagctgaaccaagaaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25934312 |
tagaagctctatttctgcagctagaagttcaggtgtgaatggtggtttgatgttagaatcaggtaggagaagtggttacagtgaagctgaaccaagaaga |
25934411 |
T |
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| Q |
212 |
agtgatttcttctatgaatatgaaaatggtagaaagagtggtgtaatggaaattgatggaagcagctacaataggcgtgtgttttcactaagagagagtg |
311 |
Q |
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| T |
25934412 |
agtgatttcttctatgaatatgaaaatggtagaaagagtggtgtaatggaaattgatggaagcagctacaataggcgtgtgttttcactaagagagagtg |
25934511 |
T |
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| Q |
312 |
attttaaaggcatggatgagtctagttttattgatttaaagcttgattattcatctgaattaaaaatggcagatacactctcagcttttggaagcataag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934512 |
attttaaaggcatggatgagtctagttttattgatttaaagcttgattattcatctgaattaaaaatggcagatacactctcagcttttggaagcataag |
25934611 |
T |
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| Q |
412 |
aggtggaaatttcatgacacatgatgctggtggcggtggcggtggtggtgatggaggttcatgtaggttc |
481 |
Q |
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| T |
25934612 |
aggtggaaatttcatgacacatgatgctggtggcggtggtggtggaggtgatggaggttcatgtaggttc |
25934681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 172 - 366
Target Start/End: Complemental strand, 16704111 - 16703920
Alignment:
| Q |
172 |
tggtaggagaagtggttacagtgaagctgaaccaagaagaagtgatttcttctatgaatatgaaaatggtagaaagagtggtgtaatggaaattgatgga |
271 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
16704111 |
tggtaggagaagtggttatagtgaagctgaaccaagaagaagtgatttcttctatgaatatgaaaatggtaggaagagtggtgttatggaaattgatgga |
16704012 |
T |
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| Q |
272 |
agcagctacaataggcgtgtgttttcactaagagagagtgattttaaaggcatggatgagtctagttttattgatttaaagcttgattattcatc |
366 |
Q |
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| T |
16704011 |
---agctacaacaggcgtctgttttcactaagagagagtgattttaaaggcatggatgaatctcgttttattgatttgaagcttgattattcatc |
16703920 |
T |
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