View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19866_low_5 (Length: 427)

Name: NF19866_low_5
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19866_low_5
NF19866_low_5
[»] chr5 (4 HSPs)
chr5 (19-418)||(22689660-22690059)
chr5 (25-226)||(28419491-28419692)
chr5 (25-408)||(28432542-28432923)
chr5 (290-406)||(28419284-28419400)
[»] chr3 (11 HSPs)
chr3 (45-195)||(1090764-1090914)
chr3 (45-150)||(1077003-1077108)
chr3 (45-150)||(1299912-1300017)
chr3 (45-150)||(1050086-1050191)
chr3 (43-193)||(13854732-13854882)
chr3 (45-150)||(1107204-1107309)
chr3 (290-354)||(1107000-1107064)
chr3 (290-406)||(13854522-13854638)
chr3 (290-335)||(1076813-1076858)
chr3 (290-335)||(1300162-1300207)
chr3 (292-321)||(5854827-5854856)
[»] scaffold0090 (2 HSPs)
scaffold0090 (43-209)||(8614-8780)
scaffold0090 (290-406)||(8861-8977)
[»] chr8 (3 HSPs)
chr8 (46-197)||(23555099-23555250)
chr8 (292-351)||(23554765-23554824)
chr8 (291-347)||(23360284-23360340)
[»] chr2 (1 HSPs)
chr2 (45-101)||(34328566-34328622)
[»] chr6 (1 HSPs)
chr6 (293-335)||(3979622-3979664)


Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 22689660 - 22690059
Alignment:
Q  19 ctattcggcatgtactcgtagagtaacattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaata 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22689660 ctattcggcatgtactcgtagagtaacattttctcgtctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaata 22689759  T
Q  119 tgacttcatttttaaattctattgatccttgtactgaatttttcgaaagtcttttgactgcaattacttgtccatcttgcaatgtaccctaattttcata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22689760 tgacttcatttttaaattctattgatccttgtactgaatttttcgaaagtcttttaactgcaattacttgtccatcttgcaatgtaccctaattttcata 22689859  T
Q  219 gttgagaaagaaagagatcaataacgtaattcattagtttctttttgtattacttttacacatgatgaaaatttaccttgtataccggtccaaaaccacc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22689860 gttgagaaagaaagagatcaataacgtaattcattagtttctttttgtattacttttacacatgatgaaaatttaccttgtataccggtccaaaaccacc 22689959  T
Q  319 ttcaccaagtttattatcatttgagaagttattggtcgccttgagtactgtagctagttcaaatataggaagctcaaaatcatcatgtccatcttcatct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22689960 ttcaccaagtttattatcatttgagaagttattggtcgccttgagtactgtagctagttcaaatataggaagctcaaaatcatcatgtccatcttcatct 22690059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 28419692 - 28419491
Alignment:
Q  25 ggcatgtactcgtagagtaacattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgactt 124  Q
    |||||||| || |||| ||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  28419692 ggcatgtattcatagattaacagtttttcatctccttcaatgcaacaaccaagaaccttaacaagatttcgatgttgcaatttaacgcacaatatgactt 28419593  T
Q  125 catttttaaattctattgatccttgtactgaatttttcgaaagtcttttgactgcaattacttgtccatcttgcaatgtaccctaattttcatagttgag 224  Q
    |||||||||||||| | ||||||||  | ||||||   ||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||    
T  28419592 catttttaaattctttcgatccttgctcagaatttcctgaaagtcttttgactgcaattacatgtccatcttgcaatgtagcctgaatttcatagttgag 28419493  T
Q  225 aa 226  Q
    ||    
T  28419492 aa 28419491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 25 - 408
Target Start/End: Complemental strand, 28432923 - 28432542
Alignment:
Q  25 ggcatgtactcgtagagtaacattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgactt 124  Q
    |||||||| || |||||||| | | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28432923 ggcatgtattcatagagtaagagtctttcatctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcacacaatatgactt 28432824  T
Q  125 catttttaaattctattgatccttgtactgaatttttcgaaagtcttttgactgcaattacttgtccatcttgcaatgtaccctaattttcatagttgag 224  Q
    |||||||||||||| |  |||||||    ||||||   ||||||||||||||||||| | |||||||||||   |||||||||| | |||||| |||       
T  28432823 catttttaaattctttcaatccttgacaagaatttcctgaaagtcttttgactgcaacttcttgtccatctaataatgtaccctgagtttcattgtt--a 28432726  T
Q  225 aaagaaagagatcaataa-cgtaattcattagtt-tctttttgtattacttttacacatgatgaaaatttaccttgtataccggtccaaaaccaccttca 322  Q
    ||| |||| ||   ||||    |||||||||||| ||||||| | ||  |  || ||||| |  |||| |||||||||||||||||||||||||||||||    
T  28432725 aaaaaaagtgaattataataaaaattcattagttctctttttatctt--tactagacatgttagaaatgtaccttgtataccggtccaaaaccaccttca 28432628  T
Q  323 ccaagtttattatcatttgagaagttattggtcgccttgagtactgtagctagttcaaatataggaagctcaaaatcatcatgtcc 408  Q
    || |||||||| |   |||||||||||||||| |||||||  | ||||||||| ||||| | ||||||||||||||| ||||||||    
T  28432627 ccgagtttattgttgattgagaagttattggtggccttgatcattgtagctagatcaaagaaaggaagctcaaaatcttcatgtcc 28432542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 406
Target Start/End: Complemental strand, 28419400 - 28419284
Alignment:
Q  290 tttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttattggtcgccttgagtactgtagctagttcaaatataggaa 389  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| |   ||||||||||||  || ||||||| || ||||||||| ||||| | |||||    
T  28419400 tttaccttgtatacgggtccaaatccaccttcaccaagcttattgttggttgagaagttatcagtggccttgattattgtagctagatcaaagaaaggaa 28419301  T
Q  390 gctcaaaatcatcatgt 406  Q
    | |||||||| ||||||    
T  28419300 gatcaaaatcttcatgt 28419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 195
Target Start/End: Complemental strand, 1090914 - 1090764
Alignment:
Q  45 cattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgat 144  Q
    |||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| | ||| || || ||||| |||||||||||||||||| |||||    
T  1090914 cattctctcttctccttgaatgcaacaaccaagaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgat 1090815  T
Q  145 ccttgtactgaatttttcgaaagtcttttgactgcaattacttgtccatct 195  Q
    ||||||  |||| ||   ||||| |||||||| |||||  |||| ||||||    
T  1090814 ccttgttttgaacttcctgaaagccttttgacggcaatctcttgcccatct 1090764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 1077108 - 1077003
Alignment:
Q  45 cattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgat 144  Q
    |||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| | ||| || || ||||| |||||||||||||||||| |||||    
T  1077108 cattctctcttctccttgaatgcaacaaccaagaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgat 1077009  T
Q  145 ccttgt 150  Q
    ||||||    
T  1077008 ccttgt 1077003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 1299912 - 1300017
Alignment:
Q  45 cattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgat 144  Q
    |||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| | ||| || || ||||| |||||||||||||||||| |||||    
T  1299912 cattctctcttctccttgaatgcaacaaccaagaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgat 1300011  T
Q  145 ccttgt 150  Q
    ||||||    
T  1300012 ccttgt 1300017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 1050191 - 1050086
Alignment:
Q  45 cattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgat 144  Q
    |||| |||| ||||||| |||||||||||||| |||||||||||||||||| ||||| | ||| || || ||||| |||||||||||||||||| ||| |    
T  1050191 cattctctcttctccttgaatgcaacaaccaagaaccttaacaagatttcggtgttgaagttttgcacataatataacttcatttttaaattctcttgtt 1050092  T
Q  145 ccttgt 150  Q
    ||||||    
T  1050091 ccttgt 1050086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 13854882 - 13854732
Alignment:
Q  43 aacattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattg 142  Q
    ||||||||||| ||||||||||| |||||||||| |||||| ||||||||||| ||||| | |||||  || ||||| |||||||||| ||| ||| | |    
T  13854882 aacattttctcttctccttcaatacaacaaccaacaacctttacaagatttcggtgttgaagtttagtacataatataacttcattttaaaactctttag 13854783  T
Q  143 atccttgtactgaatttttcgaaagtcttttgactgcaattacttgtccat 193  Q
     ||||||| | ||| |  | ||||| |||||||| |||||| |||| ||||    
T  13854782 gtccttgtccagaactccttgaaagccttttgacagcaatttcttgcccat 13854732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 1107309 - 1107204
Alignment:
Q  45 cattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgat 144  Q
    ||||||||| ||||||| ||| |||||||||| |||||| ||||||||||| ||||| | ||| |  || || || |||||||||||||||||| ||| |    
T  1107309 cattttctcttctccttgaatacaacaaccaagaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgtt 1107210  T
Q  145 ccttgt 150  Q
    ||||||    
T  1107209 ccttgt 1107204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 1107064 - 1107000
Alignment:
Q  290 tttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttattggt 354  Q
    |||||||| ||||||||||||||||||||||| ||||| || |||||||| ||||||| ||||||    
T  1107064 tttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggt 1107000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 406
Target Start/End: Complemental strand, 13854638 - 13854522
Alignment:
Q  290 tttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttattggtcgccttgagtactgtagctagttcaaatataggaa 389  Q
    |||||||| ||||| ||||||||||||||||| || || ||||| |||   ||||||||||| || |||| ||||| ||||||||| || || || ||||    
T  13854638 tttaccttatatactggtccaaaaccaccttccccgagcttattgtcaaaagagaagttatttgttgcctcgagtattgtagctaggtcgaagatgggaa 13854539  T
Q  390 gctcaaaatcatcatgt 406  Q
    |||||| ||| ||||||    
T  13854538 gctcaatatcttcatgt 13854522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 1076858 - 1076813
Alignment:
Q  290 tttaccttgtataccggtccaaaaccaccttcaccaagtttattat 335  Q
    |||||||| ||||| |||||||| |||||||| |||||||||||||    
T  1076858 tttaccttatatactggtccaaagccaccttctccaagtttattat 1076813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 1300162 - 1300207
Alignment:
Q  290 tttaccttgtataccggtccaaaaccaccttcaccaagtttattat 335  Q
    |||||||| ||||| |||||||| |||||||| |||||||||||||    
T  1300162 tttaccttatatactggtccaaagccaccttctccaagtttattat 1300207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Complemental strand, 5854856 - 5854827
Alignment:
Q  292 taccttgtataccggtccaaaaccaccttc 321  Q
    ||||||||||||||||||||||||||||||    
T  5854856 taccttgtataccggtccaaaaccaccttc 5854827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 8614 - 8780
Alignment:
Q  43 aacattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattg 142  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| | |||||  || ||||| |||||||| ||||| ||| |      
T  8614 aacattttctcatctccttcaatacaacaaccaacaaccttaacaagatttcggtgttgaagtttagtacataatataacttcattcttaaactctttaa 8713  T
Q  143 atccttgtactgaatttttcgaaagtcttttgactgcaattacttgtccatcttgcaatgtacccta 209  Q
     ||||||| | ||| |  | ||||| |||||||| |||||| ||||||||||  |||||||||||||    
T  8714 gtccttgtccagaactccttgaaagccttttgacagcaatttcttgtccatcaagcaatgtacccta 8780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 8861 - 8977
Alignment:
Q  290 tttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttattggtcgccttgagtactgtagctagttcaaatataggaa 389  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||   |||||||| || || || ||||||| |||| || | || || |||||||    
T  8861 tttaccttgtataccggtccaaaaccaccttcaccgagcttgttatcaaaagagaagttttttgttgcgttgagtattgtatcttgatcgaagataggaa 8960  T
Q  390 gctcaaaatcatcatgt 406  Q
    |||||||||| ||||||    
T  8961 gctcaaaatcttcatgt 8977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 23555250 - 23555099
Alignment:
Q  46 attttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgatc 145  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||||| ||||| | |||||| || ||||| |||||| | |||||||||    |||    
T  23555250 attttctcatctttttcaatgcaacaaccaatcaccttaacaagatttcggtgttgaagtttagcacataatattacttcactcttaaattcttccaatc 23555151  T
Q  146 cttgtactgaatttttcgaaagtcttttgactgcaattacttgtccatcttg 197  Q
    ||||||  |||||    ||||||||||||||||| ||| |||| ||||||||    
T  23555150 cttgtatagaattcccagaaagtcttttgactgctatttcttgaccatcttg 23555099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 23554824 - 23554765
Alignment:
Q  292 taccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttatt 351  Q
    ||||||||||||||||||||||||||||||||||||||| || ||  ||||||| |||||    
T  23554824 taccttgtataccggtccaaaaccaccttcaccaagtttgttgtccgttgagaacttatt 23554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 23360340 - 23360284
Alignment:
Q  291 ttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagt 347  Q
    ||||||| || || || ||||||||||||||||||||||| || |||||||||||||    
T  23360340 ttaccttataaacaggaccaaaaccaccttcaccaagtttgttgtcatttgagaagt 23360284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 34328622 - 34328566
Alignment:
Q  45 cattttctcctctccttcaatgcaacaaccaataaccttaacaagatttcgatgttg 101  Q
    |||||||||||||||||||| ||||||||||| || ||| ||||||||||| |||||    
T  34328622 cattttctcctctccttcaaggcaacaaccaagaagctttacaagatttcggtgttg 34328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 3979622 - 3979664
Alignment:
Q  293 accttgtataccggtccaaaaccaccttcaccaagtttattat 335  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  3979622 accttgtataccggtccaaaaccaccttctccaagtttgttat 3979664  T

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