View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19866_low_7 (Length: 393)
Name: NF19866_low_7
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 1285180 - 1285510
Alignment:
| Q |
13 |
aatatcgcaaatggatcgtacaaatatcatttcccattaagttataggcaaagacccattcggtgtcatttatcttgtttatacactttattaatttatt |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
1285180 |
aatatcgcaaattaatcgtacaaatatcatttcccattaagttataggcaaagacccattaattt--atttatcatgtttatacactttattaatttatt |
1285277 |
T |
|
| Q |
113 |
tattttcttggtaagtccttatatatcttgtaaaatgtttacaagttacctgcccaaaannnnnnnnnacaagttaccctcttgatattgtattaaattt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1285278 |
tattttcttggtaagtccttatatatcttgtaaaatgtttacaagttacctgcccaaaaaaattgtttacaagttaccctcttgatattgtattaaattt |
1285377 |
T |
|
| Q |
213 |
gaccgtagaaaacatttaacttatgcataaaatgactccacctcatggatgtattgttcataaaactaagttttcatttgttaaatactactgttactct |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
1285378 |
gaccatagaaaacatttaacttatgcataaaatgactccacctcatggatgtattgttcataaaactaagttttcatttgttcaatactactattactct |
1285477 |
T |
|
| Q |
313 |
tttgagatttccccttgtctatcatgaaaggag |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1285478 |
tttgagatttccccttgtctatcatgaaaggag |
1285510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University