View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19866_low_9 (Length: 381)
Name: NF19866_low_9
Description: NF19866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19866_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 48749596 - 48749233
Alignment:
| Q |
29 |
tcagattataacaaatttatctcatcttaaatttacacttcccgaatcatggaagaaaata------------------aaaacaaattatgttactgac |
110 |
Q |
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| T |
48749596 |
tcagattataacaaatttatctcatcttaaatttacacttcccgaatcatggaagaaaatagataaaattaagaaaataaaaacaaattatgttactgac |
48749497 |
T |
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| Q |
111 |
tcactctgttcttctgtttccatttcttctttctctgatttctcaacagtttcatggttttcgcgttgttcatccgagtgattcgcatctagattcataa |
210 |
Q |
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| T |
48749496 |
tgactctgttcttctgtttccatttcttctttctctgatttctcaacagtttcatggttttcgcgttgttcatccgagtgattcgcatctagattcataa |
48749397 |
T |
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| Q |
211 |
cagaagatgattttggaaaaacaggtgtagctaaaaacgttgggttctgatcaccagccataatgacaagaactttctcttcataaactttcacagattc |
310 |
Q |
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| T |
48749396 |
cagaagatgattttggaaaaacaggtgtagctaaaaacgttgggttctgatcaccagccataatgacaagaactttctcttcataaactttcacagattc |
48749297 |
T |
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| Q |
311 |
tttgtttgaattttcaccttctttttcattctccatgtttctgttgttgctgttatattcttcg |
374 |
Q |
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| T |
48749296 |
tttgtttgaattttcaccttctttttcattctccatgtttctgttgttgctgttattttcttcg |
48749233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 3425695 - 3425762
Alignment:
| Q |
231 |
acaggtgtagctaaaaacgttgggttctgatcaccagccataatgacaagaactttctcttcataaac |
298 |
Q |
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| T |
3425695 |
acaggggtagccaagaatgttgggttctcattaccagccataatgacaaggatattctcttcataaac |
3425762 |
T |
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