View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19867_high_1 (Length: 470)
Name: NF19867_high_1
Description: NF19867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19867_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 38090715 - 38090365
Alignment:
| Q |
13 |
aaaattctctgtagagtagaatgaaattgacacatctagtctttagcaattgccacttgc----------tagctctcatataatagtaccattttcctt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38090715 |
aaaattctctgtagagtagaatgaaattgacacatctagtctttagcaattgccacttgcaagctcttgctagctctcatataatagtaccattttcctt |
38090616 |
T |
|
| Q |
103 |
acactaattttatatttaat---gttaatgtttaccctggacctaacgctgtaagaaaattcgttacatgaatattatgaattactagctagtagttaag |
199 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090615 |
accctaattttatatttaataatgttaatgtttaccctggacctaacgttgtaagaaaattcgttacatgaatattatgaattactagctagtagttaag |
38090516 |
T |
|
| Q |
200 |
aagtatacatatgatagatacaaagttaccatctcatctcattcataacataactaaccaaaatttaaaatgtcacgccattgtacaaatttgtttctta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090515 |
aagtatacatatgatagatacaaagttaccatctcatctcattcataacataactaaccaaaatttaaaatgtcacgccattgtacaaatttgtttctta |
38090416 |
T |
|
| Q |
300 |
attacttaaacatgcaatatcctctgcttagtgaatgatactagaaatgca |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090415 |
attacttaaacatgcaatatcctctgcttagtgaatgatactagaaatgca |
38090365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 348 - 455
Target Start/End: Complemental strand, 38090332 - 38090223
Alignment:
| Q |
348 |
gcacttgatatttctaagtgtgaattttttcaggtgattatttatttatagtgtgaaatgtgaaattcgattata------taaactatatatatcctca |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38090332 |
gcacttgatatttctaagtgtgaattttttcgggtgattat----ttatagtgtgaaatgtgaaattcgattatataaacttaaactatatatatcctca |
38090237 |
T |
|
| Q |
442 |
taatgtgtagtact |
455 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
38090236 |
tcatgtgtagtact |
38090223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University