View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19867_high_2 (Length: 303)
Name: NF19867_high_2
Description: NF19867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19867_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 42894207 - 42893913
Alignment:
| Q |
1 |
gttctcagcgttgagaaaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894207 |
gttctcagcgttgagaaaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaa |
42894108 |
T |
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| Q |
101 |
cctactaacagcatggaggttgcttcagggctgcttgatccattctcagatgaaacacatgaactcggcggcgacaccgacgctgatcgtgttggtgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894107 |
cctactaacagcatggaggttgcttcagggctgcttgatccattctcagatgaaacacatgaactcggcggcgacaccgacgctgatcgtgttggtgatg |
42894008 |
T |
|
| Q |
201 |
attccattcttctgttcacccttggtggtgacaaattcagcttcaaatctagctttggcccacttccgtttcttctactcatcttcttcctctgt |
295 |
Q |
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| T |
42894007 |
attccattcttctgttcacccttggtggtgacaaattcagcttcaaatctagctttggcccacttccgtttcttctactcatcttcttcctctgt |
42893913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 25583631 - 25583747
Alignment:
| Q |
17 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
116 |
Q |
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|||||||| ||||| ||||| | |||||| || || |||||||||| ||||| ||||| |||||||| ||||||||||||||||| || || | ||||| |
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| T |
25583631 |
aaatcaagtaaaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
25583730 |
T |
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| Q |
117 |
aggttgcttcagggctg |
133 |
Q |
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| T |
25583731 |
aagtggcttctgggctg |
25583747 |
T |
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