View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19867_high_3 (Length: 284)
Name: NF19867_high_3
Description: NF19867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19867_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 29510729 - 29510982
Alignment:
| Q |
19 |
aaatttgtagctgtcatcatcttcaataccaaatgttatatgcttattcttttctctttgaggaaagttttcagattgatgagaaggtaaggtaggaata |
118 |
Q |
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| T |
29510729 |
aaatttgtagctgtcatcatcttcaataccaaatgttatatgcttattcttttctctttgaggaaagttttcagattgatgagaaggtaaggtaggaaga |
29510828 |
T |
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| Q |
119 |
ggagtggtttcatctttaaaatctttacggattccccacagaacctctgcacaattcttcataggtggccttgaatgtattgaaggtgccaggcattgaa |
218 |
Q |
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| T |
29510829 |
ggagtggtttcatctttaaaatctttacggattccccacagaacctctgcacaattcttcataggtggccttgaatgtattgaaggtgccaggcattgaa |
29510928 |
T |
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| Q |
219 |
aagctagcttgaaaactttcttcactaccttgatggaggctggacttcttctca |
272 |
Q |
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| T |
29510929 |
aagctagcttgaaaactttcttcactaccttgatggaggctggacttcttctca |
29510982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 29504944 - 29505159
Alignment:
| Q |
23 |
ttgtagctgtcatcatcttcaataccaaatgttatatgcttattcttttctctttgaggaaagttttcagattgatgagaaggtaaggtaggaataggag |
122 |
Q |
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| T |
29504944 |
ttgtagccgtcctcatcttcaataccaaataacatatgcttattcgtttttctgtga--aaaagtttcagattgatgagatgttaaggcagtaagaggag |
29505041 |
T |
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| Q |
123 |
tggtttcatctttaaaatctttacggattccccacagaacctctgcacaattcttcataggtggccttgaatgtattgaaggtgccaggcattgaaaagc |
222 |
Q |
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| T |
29505042 |
tggtttcatctttaaaatcttttcgtattctccacataacttctgcacaattcttcataggtggccttgaatgtatggaaggtgcaaggtattgaaaagc |
29505141 |
T |
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| Q |
223 |
tagcttgaaaactttctt |
240 |
Q |
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| T |
29505142 |
taatttgaaaaccttctt |
29505159 |
T |
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