View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19867_high_6 (Length: 237)
Name: NF19867_high_6
Description: NF19867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19867_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41691655 - 41691435
Alignment:
| Q |
1 |
tgtgctgatataagaattattcatcataaaacataatgcttcacattttaaggaatgtggtaaaccattgactgtgattggccttctataataggtatca |
100 |
Q |
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| T |
41691655 |
tgtgctgatataagaattattcatcataaaacataatgcttcacattttaaggaatgtggtaaaccattgactgtgattggccttctataataggtatca |
41691556 |
T |
|
| Q |
101 |
ggaagagtcacttactgtggtcatgagttatcagaatttgttcctcaaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgacag |
200 |
Q |
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| T |
41691555 |
ggaagagtcacttactgtggtcatgagttatcagaatttgttcctcaaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgacag |
41691456 |
T |
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| Q |
201 |
taagagagactttggattttt |
221 |
Q |
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| T |
41691455 |
taagagagactttggattttt |
41691435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 19538515 - 19538632
Alignment:
| Q |
93 |
aggtatcaggaagagtcacttactgtggtcatgagttatcagaatttgttcctcaaagaacatgtgcatatattagtcaacataatcttcatcatggaga |
192 |
Q |
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| T |
19538515 |
aggtatcaggaagagtcacttacaatggtcatgaactgtcagaatttgttcctcaaagaacatgtgcttatattagtcagcatgatcttcaccatggaga |
19538614 |
T |
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| Q |
193 |
gatgacagtaagagagac |
210 |
Q |
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| T |
19538615 |
aacgacagtgagagagac |
19538632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 43526053 - 43526147
Alignment:
| Q |
98 |
tcaggaagagtcacttactgtggtcatgagttatcagaatttgttcctcaaagaacatgtgcatatattagtcaacataatcttcatcatggaga |
192 |
Q |
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| T |
43526053 |
tcaggaagagtcacttacaatggtcatgaactgtcagaatttgttcctcaaagaacatgtgcttatattagtcagcatgatcttcaccttggaga |
43526147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 2872981 - 2873045
Alignment:
| Q |
134 |
gaatttgttcctcaaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgac |
198 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| || ||||| |||||| ||||| |
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| T |
2872981 |
gaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgac |
2873045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 2901844 - 2901780
Alignment:
| Q |
134 |
gaatttgttcctcaaagaacatgtgcatatattagtcaacataatcttcatcatggagagatgac |
198 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| || ||||| |||||| ||||| |
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| T |
2901844 |
gaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgac |
2901780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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