View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19867_low_5 (Length: 277)
Name: NF19867_low_5
Description: NF19867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19867_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 29511571 - 29511325
Alignment:
| Q |
1 |
tggcagactttggttttgcaagattgtccgaagaccctggtgcaactcatatttcaactcaagttaaaggaacagctggatatatggatcctgagtactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511571 |
tggcagactttggttttgcaagattgtccgaagaccctggtgcaactcatatttcaactcaagttaaaggaacagctggatatatggatcctgagtactt |
29511472 |
T |
|
| Q |
101 |
gagaacttatcaactcacagaaaagagtgacgtttattcatttggtgtattgcttgttgaaatgatgacaggaagacatccagttgaaccaaagaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511471 |
gagaacttatcaactcacagaaaagagtgatgtttattcatttggtgtattgcttgttgaaatgatgacaggaagacatccagttgaaccaaagaagaaa |
29511372 |
T |
|
| Q |
201 |
attgatgagagagtcacaatcagatgggtatgcatgttaaatctccc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511371 |
attgatgagagagtcacaatcagatgggtatgcatgttaaatctccc |
29511325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 24915774 - 24915576
Alignment:
| Q |
1 |
tggcagactttggttttgcaagattg--tcc-gaagaccctggtgcaactcatatttcaactcaagttaaaggaacagctggatatatggatcctgagta |
97 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||||| || |
|
|
| T |
24915774 |
tggcagactttggttttgcaaggttggctccagaagaccctaatgcaactcatatttcaactcaagttaaaggaacagccggttatttggatcctgatta |
24915675 |
T |
|
| Q |
98 |
cttgagaacttatcaactcacagaaaagagtgacgtttattcatttggtgtattgcttgttgaaatgatgacaggaagacatccagttgaaccaaagaa |
196 |
Q |
| |
|
||||||| |||||| | ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24915674 |
tatgagaacacgccaactctcggaaaagagtgatgtttattcatttggtgtgttacttgttgaaatcatgacaggaagacatccagttgaaccaaagaa |
24915576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 11193364 - 11193263
Alignment:
| Q |
60 |
caagttaaaggaacagctggatatatggatcctgagtacttgagaacttatcaactcacagaaaagagtgacgtttattcatttggtgtattgcttgttg |
159 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| || ||||||| |||||||||||| || |||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
11193364 |
caagttaagggaacagctggctacttggatccggaatacttgaaaacttatcaactaaccgaaaagagtgacgtttattcgttcggtgttttgcttgttg |
11193265 |
T |
|
| Q |
160 |
aa |
161 |
Q |
| |
|
|| |
|
|
| T |
11193264 |
aa |
11193263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University