View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_high_10 (Length: 339)

Name: NF19868_high_10
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_high_10
NF19868_high_10
[»] chr5 (4 HSPs)
chr5 (13-324)||(2586291-2586603)
chr5 (154-193)||(35963914-35963953)
chr5 (155-244)||(6508361-6508449)
chr5 (190-222)||(7693055-7693087)
[»] chr7 (1 HSPs)
chr7 (153-244)||(39104029-39104120)
[»] chr6 (2 HSPs)
chr6 (157-244)||(12104450-12104537)
chr6 (207-251)||(24830790-24830834)
[»] chr4 (1 HSPs)
chr4 (154-241)||(42450912-42450998)
[»] chr1 (3 HSPs)
chr1 (207-249)||(40695128-40695170)
chr1 (157-197)||(10442957-10442997)
chr1 (162-213)||(7335670-7335722)
[»] chr2 (2 HSPs)
chr2 (138-197)||(43471065-43471124)
chr2 (153-246)||(17944424-17944519)
[»] chr8 (1 HSPs)
chr8 (186-243)||(29149375-29149432)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 2586291 - 2586603
Alignment:
Q  13 aatatgacactttaggttaagccgacagtacatctttcctgaatgtactgcttatgtgaccccatcacctgcgggagattatcaactgacatgcccttac 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2586291 aatatgacactttaggttaagtcgacagtacatctttcctgaatgtactgcttatgtgaccccatcacctgcgggagattatcaactgacatgcccttac 2586390  T
Q  113 cattaccacataatcctacttaattataatcaaggtcggatcaataatcttcaaaagtaagtgaggtttaaagcaaattttaataaatgaagtctttttt 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2586391 cattaccacataatcctacttaattataatcaaggtcggaccaataatctttaaaagtaagtgaggtttaaagcaaattttaataaatgaagtctttttt 2586490  T
Q  213 gtttgcatatgaggcctttttgtttataaaatttgatgacaa-nnnnnnnnnnnnngttggtaggcctaaagtgagggttttaatggtcttgcccttgga 311  Q
    |||||||||||||||||||||| |||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||    
T  2586491 gtttgcatatgaggcctttttgcttataaaatttgatgacaattttttttttttttgttggtaggcctaaagtgagggttttaatggtcttgcccttgga 2586590  T
Q  312 cgatcccgcttat 324  Q
    ||| |||||||||    
T  2586591 cgaccccgcttat 2586603  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 35963914 - 35963953
Alignment:
Q  154 caataatcttcaaaagtaagtgaggtttaaagcaaatttt 193  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  35963914 caataatcttcaaaagtaagtgaggtctaaagcaattttt 35963953  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 6508449 - 6508361
Alignment:
Q  155 aataatcttcaaaagtaagtgaggtttaaagcaaattttaataaatgaagtcttttttgtttgcatatgaggcctttttgtttataaaat 244  Q
    |||||||||||||||||| | ||||||||||||| |||| ||| |||  || |||||||| || ||| ||| | |||||| |||||||||    
T  6508449 aataatcttcaaaagtaactcaggtttaaagcaagttttgatatatggtgt-ttttttgtctgtataggagacatttttgcttataaaat 6508361  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 7693055 - 7693087
Alignment:
Q  190 ttttaataaatgaagtcttttttgtttgcatat 222  Q
    |||||||| ||||||||||||||||||||||||    
T  7693055 ttttaatatatgaagtcttttttgtttgcatat 7693087  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 39104029 - 39104120
Alignment:
Q  153 tcaataatcttcaaaagtaagtgaggtttaaagcaaattttaataaatgaagtcttttttgtttgcatatgaggcctttttgtttataaaat 244  Q
    |||||||| ||||| |||||||| || |||||| || |||||||| |||  ||||||||||| || ||||||||| ||||||||||||||||    
T  39104029 tcaataattttcaatagtaagtggggcttaaagaaagttttaatatatgtggtcttttttgtctgtatatgaggcatttttgtttataaaat 39104120  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 12104450 - 12104537
Alignment:
Q  157 taatcttcaaaagtaagtgaggtttaaagcaaattttaataaatgaagtcttttttgtttgcatatgaggcctttttgtttataaaat 244  Q
    |||||||||||||||||||||   |||| ||||||||  || || ||| ||||||||||| |||||||||| |||||  |||||||||    
T  12104450 taatcttcaaaagtaagtgagacctaaatcaaattttgttatataaagacttttttgtttacatatgaggcgtttttacttataaaat 12104537  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 24830790 - 24830834
Alignment:
Q  207 ttttttgtttgcatatgaggcctttttgtttataaaatttgatga 251  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||    
T  24830790 ttttttatttgcatatgagacctttttgtttataaaatttaatga 24830834  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 42450912 - 42450998
Alignment:
Q  154 caataatcttcaaaagtaagtgaggtttaaagcaaattttaataaatgaagtcttttttgtttgcatatgaggcctttttgtttataa 241  Q
    |||||||| |||||||||||||| || ||| ||||||||||||| ||||  | |||||||||| |||||||| | |||||| ||||||    
T  42450912 caataatcctcaaaagtaagtgaagtctaa-gcaaattttaatatatgagattttttttgttttcatatgagacgtttttgcttataa 42450998  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 40695170 - 40695128
Alignment:
Q  207 ttttttgtttgcatatgaggcctttttgtttataaaatttgat 249  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
T  40695170 ttttttgtttgcatatgaagtctttttgtttataaaatttgat 40695128  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 10442957 - 10442997
Alignment:
Q  157 taatcttcaaaagtaagtgaggtttaaagcaaattttaata 197  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  10442957 taatcgtcaaaagtaagtgagatttaaagcaaattttaata 10442997  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 7335670 - 7335722
Alignment:
Q  162 ttcaaaagtaagtgaggtttaaa-gcaaattttaataaatgaagtcttttttg 213  Q
    ||||| |||||| ||| |||||| ||||||||||||| |||||||||||||||    
T  7335670 ttcaatagtaagcgagttttaaaagcaaattttaatatatgaagtcttttttg 7335722  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 43471065 - 43471124
Alignment:
Q  138 ataatcaaggtcggatcaataatcttcaaaagtaagtgaggtttaaagcaaattttaata 197  Q
    ||||||||||||   |||||||||||||| ||||||||| ||||||||||| ||| ||||    
T  43471065 ataatcaaggtcatttcaataatcttcaatagtaagtgaagtttaaagcaagtttcaata 43471124  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 17944424 - 17944519
Alignment:
Q  153 tcaataatcttcaaaagtaagtgaggtttaaagcaaattttaa--taaatgaagtcttttttgtttgcatatgaggcctttttgtttataaaattt 246  Q
    ||||||||||| |||||||| |||||| | || ||||||||    || |||| || |||||||| || ||||||| | ||||||||||||||||||    
T  17944424 tcaataatctttaaaagtaaatgaggtctgaaacaaattttttgttatatgaggtattttttgtctgaatatgagacatttttgtttataaaattt 17944519  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 29149375 - 29149432
Alignment:
Q  186 caaattttaataaatgaagtcttttttgtttgcatatgaggcctttttgtttataaaa 243  Q
    |||||||||||||||||   ||||||  |||| ||||||||||||||| |||||||||    
T  29149375 caaattttaataaatgagacctttttaatttgtatatgaggcctttttatttataaaa 29149432  T

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