View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19868_high_18 (Length: 250)
Name: NF19868_high_18
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19868_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 6437688 - 6437553
Alignment:
| Q |
18 |
gatcgttcagaaaccacattggttacatttacatggtcgttttttgaagggaaccaacaaaactttttattatgtaagagagataaataaataaatagnn |
117 |
Q |
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| T |
6437688 |
gatcgttcagaaaccacattggttacattcacatggtcgttttttgaagggaaccaacaaaactttttattatgtaagagagataaataaataaatacaa |
6437589 |
T |
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| Q |
118 |
nnnnnttaaatgaacaataggtcatgtgaggacctt |
153 |
Q |
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| T |
6437588 |
aaaaattaaatgaacaataggtcatgtgaggacctt |
6437553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 6437487 - 6437414
Alignment:
| Q |
177 |
aaaaagaaagtaaaataattccaaataaatagtaccaatcttcaataaatggccatgtcatccaaatatttatt |
250 |
Q |
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| T |
6437487 |
aaaaagaaagtaaaataattttaaataaatagtaccaatcttcaataaatggccatgtcatccaaatatttatt |
6437414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 6437536 - 6437501
Alignment:
| Q |
162 |
ggtcatgtgaggaataaaaagaaagtaaaataattc |
197 |
Q |
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| T |
6437536 |
ggtcatgtgaggaataaaatgaaagtaaaataattc |
6437501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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