View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_high_2 (Length: 754)

Name: NF19868_high_2
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_high_2
NF19868_high_2
[»] chr7 (2 HSPs)
chr7 (9-730)||(31260793-31261528)
chr7 (658-726)||(8745871-8745939)
[»] chr4 (21 HSPs)
chr4 (404-464)||(4375034-4375094)
chr4 (403-464)||(12172831-12172892)
chr4 (403-464)||(12174181-12174242)
chr4 (403-464)||(12174847-12174908)
chr4 (403-464)||(12175189-12175250)
chr4 (403-464)||(12177396-12177457)
chr4 (403-464)||(12182113-12182174)
chr4 (404-464)||(52268735-52268795)
chr4 (403-464)||(12179300-12179361)
chr4 (403-464)||(12180539-12180600)
chr4 (403-464)||(12185022-12185083)
chr4 (403-464)||(12185366-12185427)
chr4 (403-464)||(12187014-12187075)
chr4 (403-464)||(12189008-12189069)
chr4 (642-730)||(9928753-9928841)
chr4 (403-462)||(12170125-12170184)
chr4 (400-442)||(12894211-12894253)
chr4 (403-464)||(12178633-12178694)
chr4 (403-464)||(12184016-12184077)
chr4 (403-464)||(12187358-12187419)
chr4 (407-464)||(12189351-12189408)
[»] chr8 (1 HSPs)
chr8 (407-464)||(38136621-38136678)
[»] chr6 (3 HSPs)
chr6 (403-464)||(16477142-16477203)
chr6 (403-461)||(16476715-16476773)
chr6 (403-460)||(15052289-15052346)
[»] chr5 (5 HSPs)
chr5 (403-464)||(3153540-3153601)
chr5 (403-464)||(21825707-21825768)
chr5 (659-720)||(6423983-6424044)
chr5 (403-455)||(25904796-25904848)
chr5 (658-700)||(42042303-42042345)
[»] chr2 (52 HSPs)
chr2 (403-464)||(24620819-24620880)
chr2 (403-464)||(24621142-24621203)
chr2 (403-464)||(24621465-24621526)
chr2 (403-464)||(24621749-24621810)
chr2 (403-464)||(24622068-24622129)
chr2 (403-464)||(24622387-24622448)
chr2 (403-464)||(24622671-24622732)
chr2 (403-464)||(24622955-24623016)
chr2 (403-464)||(24623274-24623335)
chr2 (403-464)||(24623558-24623619)
chr2 (403-464)||(24623877-24623938)
chr2 (403-464)||(24624470-24624531)
chr2 (403-464)||(24624789-24624850)
chr2 (403-464)||(24625073-24625134)
chr2 (403-464)||(24625392-24625453)
chr2 (403-464)||(24625715-24625776)
chr2 (403-464)||(24626034-24626095)
chr2 (403-464)||(24626358-24626419)
chr2 (403-464)||(24626681-24626742)
chr2 (403-464)||(24626965-24627026)
chr2 (403-464)||(24627284-24627345)
chr2 (403-464)||(24627568-24627629)
chr2 (403-464)||(24630883-24630944)
chr2 (403-464)||(24631167-24631228)
chr2 (403-464)||(24631451-24631512)
chr2 (403-464)||(24632054-24632115)
chr2 (403-464)||(24632338-24632399)
chr2 (403-464)||(24632657-24632718)
chr2 (403-464)||(24632941-24633002)
chr2 (403-464)||(24633225-24633286)
chr2 (403-464)||(24633544-24633605)
chr2 (403-464)||(24633863-24633924)
chr2 (403-464)||(24634147-24634208)
chr2 (403-464)||(24634466-24634527)
chr2 (403-464)||(24634750-24634811)
chr2 (403-464)||(24635302-24635363)
chr2 (403-464)||(24635625-24635686)
chr2 (403-464)||(24636326-24636387)
chr2 (403-464)||(24636649-24636710)
chr2 (403-464)||(24636972-24637033)
chr2 (403-464)||(24637574-24637635)
chr2 (403-464)||(24637897-24637958)
chr2 (403-464)||(24638510-24638571)
chr2 (403-464)||(24638829-24638890)
chr2 (403-464)||(24639148-24639209)
chr2 (403-464)||(24639501-24639562)
chr2 (403-464)||(24639824-24639885)
chr2 (403-464)||(24640147-24640208)
chr2 (669-730)||(30841549-30841610)
chr2 (403-464)||(24631770-24631831)
chr2 (669-720)||(18203108-18203159)
chr2 (403-464)||(3348116-3348177)
[»] chr3 (10 HSPs)
chr3 (658-730)||(50196898-50196970)
chr3 (659-730)||(30130787-30130858)
chr3 (403-464)||(16990035-16990096)
chr3 (669-730)||(30135507-30135568)
chr3 (669-730)||(30141636-30141697)
chr3 (669-730)||(30145058-30145119)
chr3 (404-443)||(35898673-35898712)
chr3 (517-583)||(20995596-20995662)
chr3 (403-464)||(3732648-3732709)
chr3 (669-726)||(42643057-42643114)
[»] chr1 (2 HSPs)
chr1 (669-722)||(28843220-28843273)
chr1 (662-724)||(370787-370848)
[»] scaffold1024 (1 HSPs)
scaffold1024 (409-464)||(1-56)


Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 9 - 730
Target Start/End: Complemental strand, 31261528 - 31260793
Alignment:
Q  9 gaagcaaagggaaatgtattgttctttttcttatttcaataaatttaattataaaactcattcataataagtgtttgagaagatagacattgtgacaca- 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||     
T  31261528 gaagcaaagggaaatgtattgttcttttttttatttcaataaatttaatgataaaactcattcacaataagtgtt-gagaagatagacattgtgacacac 31261430  T
Q  108 -tccacaagttcgatgatcctacatgattgtaatttaatgatgatttgtgaatcaaaacgaattcagctcaatcaaactcaacatatttcacctcaaaat 206  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  31261429 atccacaagttcgatgatcctacatgattgtaatttaatgatgatttgtgaatcacaacgaattcagctcaatcgaactcaacatatttcacttcaaaat 31261330  T
Q  207 cttaaatttagcatatacaaaaacgaaatgtatgatgaattatgaaaatacactttccttaattttaaactcttcacatcttcgatcacaaattcatttg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31261329 cttaaatttagcatatacaaaaacgaaatgtatgatgaattatgaaaatacactttccttaattttaaactctttacatcttcgatcacaaattcatttg 31261230  T
Q  307 agcatggtttgatctgcttttaactactctttgctttcgccgttgagttctcaaaagtttgagaatgtgtttggtttgtttatcca-------------g 393  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                  
T  31261229 agcatggttcgatctgcctttaactactctttgctttcgccgttgagttctcaaaagtttgagaatgtgtttggtttgtttattcaatgattggttcttt 31261130  T
Q  394 tgattgaaagtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttgaactagaataatagtgagtgatctcttga 493  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31261129 tgattgaaagtgcgatcatatcaacactaatgtaccggatctcatcagaactctgcagttaaacgtgcttgaactagagtaatagtgagtgatctcttga 31261030  T
Q  494 gaagtcttgtgttgcacttatcgaagcctatttaacatggtatgtgagctggttaaggattgcaatttgggaattggaccccggctcacgctaaacgtga 593  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31261029 gaagtcttgtgttgcacttatctaagcctatttaacatggtatgtgagctggttaaggattgcaatttgggaattggaccccggctcacgctaaacgtga 31260930  T
Q  594 gtggtgttgaagttggtaagttgtttgcggtttattatttgttccatgttgctcagattttcgaactgttgagtttataaatatgtttgaatatcctcat 693  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||| || |||||||||||||||||||||||||||||||||    
T  31260929 gtggtgttgaagttggtaagttgtttgcggtttgttatttgttccatgttgctcaagttctcggaccgttgagtttataaatatgtttgaatatcctcat 31260830  T
Q  694 catttaaactaattttttggatgagatccaagcctat 730  Q
    ||||||||||||||||||||||||||| |||||||||    
T  31260829 catttaaactaattttttggatgagattcaagcctat 31260793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 658 - 726
Target Start/End: Complemental strand, 8745939 - 8745871
Alignment:
Q  658 actgttgagtttataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagc 726  Q
    |||||||||| |||||||||||| || |||||||||| ||||| |||| |||| |||||||||||||||    
T  8745939 actgttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagatccaagc 8745871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 4375094 - 4375034
Alignment:
Q  404 tgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||||| | ||||||    
T  4375094 tgcgatcataccagcactaatgcatcggatatcatcagaactctgcagttaagcatgcttg 4375034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12172892 - 12172831
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12172892 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12172831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12174242 - 12174181
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12174242 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12174908 - 12174847
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12174908 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12175250 - 12175189
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12175250 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12175189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12177457 - 12177396
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12177457 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12177396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12182174 - 12182113
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||| || |||||||| | |||||| |||||||||||||||||||| ||||||||    
T  12182174 gtgcgatcatatcagcactaatgcaccggatcccatcagaactctgcagttaagcgtgcttg 12182113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 52268795 - 52268735
Alignment:
Q  404 tgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  52268795 tgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 52268735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12179361 - 12179300
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||||||||||||||| | |||||| ||| ||||||| |||||||| ||| ||||    
T  12179361 gtgcgatcataccaacactaatgcaccggatcccattagaactccgcagttaagcgttcttg 12179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12180600 - 12180539
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||| || |||||||| | |||||| ||| |||||||||||||||| ||||||||    
T  12180600 gtgcgatcatatcagcactaatgcaccggatcccattagaactctgcagttaagcgtgcttg 12180539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12185083 - 12185022
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||| |||| ||||||||    
T  12185083 gtgcgatcataccagcactaatgcaccggatcccatcagaactcagcaattaagcgtgcttg 12185022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12185427 - 12185366
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||| |||| ||||||||    
T  12185427 gtgcgatcataccagcactaatgcaccggatcccatcagaactcagcaattaagcgtgcttg 12185366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12187075 - 12187014
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||| |||| ||||||||    
T  12187075 gtgcgatcataccagcactaatgcaccggatcccatcagaactcagcaattaagcgtgcttg 12187014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12189069 - 12189008
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||||||||  |||||||    
T  12189069 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaattgtgcttg 12189008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 730
Target Start/End: Complemental strand, 9928841 - 9928753
Alignment:
Q  642 ttgctcagattttcgaactgttgagtttataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    |||||||||||| ||   |||||||| ||||||||||||||| || ||| ||  ||||| ||||||||| |||| |||| |||||||||    
T  9928841 ttgctcagatttccgggttgttgagtgtataaatatgtttgagtaccctaattttttaagctaatttttgggattagatacaagcctat 9928753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 12170184 - 12170125
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgct 462  Q
    ||||| |||||||| |||| ||| | |||||| |||||||||||||||||||| ||||||    
T  12170184 gtgcgttcataccagcactgatgcaccggatcccatcagaactctgcagttaagcgtgct 12170125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 12894253 - 12894211
Alignment:
Q  400 aaagtgcgatcataccaacactaatgtatcggatctcatcaga 442  Q
    |||||||||||||||||||||||||| | ||||| ||||||||    
T  12894253 aaagtgcgatcataccaacactaatgcaccggatttcatcaga 12894211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12178694 - 12178633
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||| |||| || |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  12178694 gtgcgaccatatcagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 12178633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12184077 - 12184016
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||| || |||||||| | |||||| ||||||||||| |||||||  ||||||||    
T  12184077 gtgcgatcatatcagcactaatgcaccggatcccatcagaactccgcagttacgcgtgcttg 12184016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 12187419 - 12187358
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||| | ||||||||||| ||| |||| ||||||||    
T  12187419 gtgcgatcataccagcactaatgcaccggagcccatcagaactcagcaattaagcgtgcttg 12187358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 12189408 - 12189351
Alignment:
Q  407 gatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||| |||||||| | |||||| ||||||||||| ||||||||  |||||||    
T  12189408 gatcataccatcactaatgcaccggatcccatcagaactccgcagttaattgtgcttg 12189351  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 38136621 - 38136678
Alignment:
Q  407 gatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||||||||| | ||||||| |||||||||||||||||  |||||||||||||||||    
T  38136621 gatcataccaatattaatgtaccggatctcatcagaacttcgcagttaaacgtgcttg 38136678  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 16477203 - 16477142
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||||||||| || ||||||||    
T  16477203 gtgcgatcataccagcactaatgcaccggatcccatcagaactctgcagtcaagcgtgcttg 16477142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 16476773 - 16476715
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgc 461  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| |||||    
T  16476773 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgc 16476715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 460
Target Start/End: Original strand, 15052289 - 15052346
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtg 460  Q
    |||||||||||||| || ||||  ||| |||| |||||||||||||||||||||||||    
T  15052289 gtgcgatcataccagcagtaatacatcagatcccatcagaactctgcagttaaacgtg 15052346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 3153601 - 3153540
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  3153601 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 3153540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 21825707 - 21825768
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||||||||| || ||||||||    
T  21825707 gtgcgatcataccagcactaatgcaccggatcccatcagaactctgcagtcaagcgtgcttg 21825768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 720
Target Start/End: Original strand, 6423983 - 6424044
Alignment:
Q  659 ctgttgagtttataaatatgtttgaatatcctcatcatttaaactaattttttggatgagat 720  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||| ||| ||||| |||||||||    
T  6423983 ctgttgagtgtataaatatgtttgagtatcatcatcttttaagctagtttttaggatgagat 6424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 25904848 - 25904796
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaa 455  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| ||||||||    
T  25904848 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaa 25904796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 700
Target Start/End: Original strand, 42042303 - 42042345
Alignment:
Q  658 actgttgagtttataaatatgtttgaatatcctcatcatttaa 700  Q
    |||||||||| ||||||||||||||| |||| |||||||||||    
T  42042303 actgttgagtgtataaatatgtttgagtatcttcatcatttaa 42042345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24620880 - 24620819
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24620880 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24620819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24621203 - 24621142
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24621203 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24621142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24621526 - 24621465
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24621526 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24621465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24621810 - 24621749
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24621810 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24621749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24622129 - 24622068
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24622129 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24622448 - 24622387
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24622448 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24622732 - 24622671
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24622732 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24623016 - 24622955
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623016 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24623335 - 24623274
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623335 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24623274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24623619 - 24623558
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623619 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24623558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24623938 - 24623877
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24623938 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24623877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24624531 - 24624470
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24624531 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24624470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24624850 - 24624789
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24624850 gtgcgatcataccagcactaatgcagcggatcccatcagaactccgcagttaagcgtgcttg 24624789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24625134 - 24625073
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24625134 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24625073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24625453 - 24625392
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24625453 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24625392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24625776 - 24625715
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24625776 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24625715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24626095 - 24626034
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24626095 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24626419 - 24626358
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24626419 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24626742 - 24626681
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24626742 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24627026 - 24626965
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24627026 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24626965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24627345 - 24627284
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24627345 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24627284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24627629 - 24627568
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24627629 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24627568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24630944 - 24630883
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24630944 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24630883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24631228 - 24631167
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24631228 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24631167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24631512 - 24631451
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24631512 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24632115 - 24632054
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24632115 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24632399 - 24632338
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24632399 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24632718 - 24632657
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24632718 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24633002 - 24632941
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633002 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24632941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24633286 - 24633225
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633286 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24633225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24633605 - 24633544
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633605 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24633544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24633924 - 24633863
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24633924 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24633863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24634208 - 24634147
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24634208 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24634147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24634527 - 24634466
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24634527 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24634466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24634811 - 24634750
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24634811 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24634750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24635363 - 24635302
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24635363 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24635302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24635686 - 24635625
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24635686 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24635625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24636387 - 24636326
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24636387 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24636326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24636710 - 24636649
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24636710 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24636649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24637033 - 24636972
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24637033 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24636972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24637635 - 24637574
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24637635 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24637574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24637958 - 24637897
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24637958 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24637897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24638571 - 24638510
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24638571 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24638510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24638890 - 24638829
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24638890 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24638829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24639209 - 24639148
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24639209 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24639148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24639562 - 24639501
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24639562 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24639501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24639885 - 24639824
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24639885 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24639824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24640208 - 24640147
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24640208 gtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24640147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 669 - 730
Target Start/End: Complemental strand, 30841610 - 30841549
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    ||||||||||||||| |||||||||| |||||||||| || | ||||||||||||| |||||    
T  30841610 tataaatatgtttgagtatcctcatcctttaaactaacttgtgggatgagatccaaacctat 30841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 24631831 - 24631770
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||  |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  24631831 gtgcgatcataccngcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 24631770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 720
Target Start/End: Complemental strand, 18203159 - 18203108
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagat 720  Q
    ||||||||||||| |||| ||||||||||| |||||| |||| |||||||||    
T  18203159 tataaatatgtttaaataccctcatcatttgaactaacttttaggatgagat 18203108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 3348177 - 3348116
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    ||||| |||||||| | |||||| | |||||| ||||||||||| |||||||| ||||||||    
T  3348177 gtgcggtcataccagcgctaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 3348116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 730
Target Start/End: Original strand, 50196898 - 50196970
Alignment:
Q  658 actgttgagtttataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    |||||||||| ||||||||||||| |||| ||||||| ||| | |||| |||| ||||||||||||| |||||    
T  50196898 actgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctat 50196970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 659 - 730
Target Start/End: Complemental strand, 30130858 - 30130787
Alignment:
Q  659 ctgttgagtttataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    ||||||||| |||||||||| |||| |||| ||||||||| | ||| ||||| ||||||||||||| |||||    
T  30130858 ctgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctat 30130787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 16990035 - 16990096
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||| ||| |||  | |||||| ||||||||||| |||||||||||||||||    
T  16990035 gtgcgatcataccagcaccaatccaccggatcccatcagaactccgcagttaaacgtgcttg 16990096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 730
Target Start/End: Complemental strand, 30135568 - 30135507
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    |||||||||| |||| || ||||||||||| | |||| |||| |||||||||||||||||||    
T  30135568 tataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctat 30135507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 730
Target Start/End: Complemental strand, 30141697 - 30141636
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    |||||||||| |||| || ||||||||||| | |||| |||| |||||||||||||||||||    
T  30141697 tataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctat 30141636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 730
Target Start/End: Complemental strand, 30145119 - 30145058
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagcctat 730  Q
    |||||||||| |||| || ||||||||||| | |||| |||| |||||||||||||||||||    
T  30145119 tataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctat 30145058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 35898712 - 35898673
Alignment:
Q  404 tgcgatcataccaacactaatgtatcggatctcatcagaa 443  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  35898712 tgcgatcatatcaacactaatgtatcggatcccatcagaa 35898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 583
Target Start/End: Original strand, 20995596 - 20995662
Alignment:
Q  517 aagcctatttaacatggtatgtgagctggttaaggattgcaatttgggaattggaccccggctcacg 583  Q
    |||||||||||||||| |||| |||| |||||| ||||||||| ||| |||| ||||| ||| ||||    
T  20995596 aagcctatttaacatgatatgagagccggttaaagattgcaatgtggaaattagacccgggcccacg 20995662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 3732648 - 3732709
Alignment:
Q  403 gtgcgatcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||||||||  |||||||| | ||||||| |||||||||| |||||||| ||| ||||    
T  3732648 gtgcgatcataccggcactaatgcaccggatctgatcagaactccgcagttaagcgtacttg 3732709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 726
Target Start/End: Original strand, 42643057 - 42643114
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaagc 726  Q
    ||||||||| |||||||| | |||||||||||  ||||||||  ||||||||||||||    
T  42643057 tataaatatatttgaataccatcatcatttaagttaatttttgagatgagatccaagc 42643114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 722
Target Start/End: Complemental strand, 28843273 - 28843220
Alignment:
Q  669 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatcc 722  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||||||||||    
T  28843273 tataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatcc 28843220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 724
Target Start/End: Original strand, 370787 - 370848
Alignment:
Q  662 ttgagtttataaatatgtttgaatatcctcatcatttaaactaattttttggatgagatccaa 724  Q
    |||||| ||||||||||||||| || |||| |||||||||||||  |||| ||||||||||||    
T  370787 ttgagtgtataaatatgtttgagtaccctcgtcatttaaactaa-cttttagatgagatccaa 370848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 1 - 56
Alignment:
Q  409 tcataccaacactaatgtatcggatctcatcagaactctgcagttaaacgtgcttg 464  Q
    |||||||| |||||||| | |||||| ||||||||||| |||||||| ||||||||    
T  1 tcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttg 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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