View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_high_3 (Length: 530)

Name: NF19868_high_3
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_high_3
NF19868_high_3
[»] chr5 (2 HSPs)
chr5 (243-361)||(28533069-28533187)
chr5 (359-511)||(28532877-28533029)
[»] chr3 (1 HSPs)
chr3 (243-353)||(51763081-51763191)
[»] chr6 (3 HSPs)
chr6 (285-359)||(6587982-6588056)
chr6 (390-487)||(6588144-6588241)
chr6 (229-275)||(14810035-14810081)
[»] chr4 (3 HSPs)
chr4 (229-276)||(1537252-1537299)
chr4 (225-322)||(53759964-53760058)
chr4 (229-281)||(1547374-1547426)
[»] chr7 (3 HSPs)
chr7 (229-278)||(15091285-15091334)
chr7 (225-269)||(10167233-10167277)
chr7 (229-261)||(10616213-10616245)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 28533187 - 28533069
Alignment:
Q  243 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 342  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28533187 tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc 28533088  T
Q  343 tctccatcaccggccgcct 361  Q
    ||||||||||||| |||||    
T  28533087 tctccatcaccggacgcct 28533069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 359 - 511
Target Start/End: Complemental strand, 28533029 - 28532877
Alignment:
Q  359 cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgt 458  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||   |    
T  28533029 cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctcagat 28532930  T
Q  459 ttctcgtcgttcaaattcacttcactcaaactcccaaacgttggtaaccgctt 511  Q
    ||| |||| |||||| ||| |||||||||||| ||||||||||||||||||||    
T  28532929 ttcccgtcattcaaaatcatttcactcaaacttccaaacgttggtaaccgctt 28532877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
Q  243 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 342  Q
    |||||||||| ||| |||| ||||||||||||| | | |   |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||| |||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc 51763180  T
Q  343 tctccatcacc 353  Q
    |||||||||||    
T  51763181 tctccatcacc 51763191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 6587982 - 6588056
Alignment:
Q  285 gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccggccgc 359  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||||||||| | ||||||| ||||||||| ||||    
T  6587982 gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccgaccgc 6588056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 6588144 - 6588241
Alignment:
Q  390 ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgtttctcgtcgttcaaattcacttcactcaa 487  Q
    |||| ||||||||||||||| || |||  |||| |  |||||||||||||||| |||||||||||||||||| |  | || ||| |||||||||||||    
T  6588144 ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaa 6588241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaac 275  Q
    ||||||||||||||||||||||| || | || |||||||||||||||    
T  14810081 atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac 14810035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg 276  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  1537252 atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg 1537299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 53759964 - 53760058
Alignment:
Q  225 tcagatttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc 322  Q
    |||||||||||||||||||| ||||||| ||| |||| | || |||||||| ||   | |||| ||||||||||||||| || ||||| |||||||||    
T  53759964 tcagatttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc 53760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt 281  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  1547374 atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt 1547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac 278  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||||||    
T  15091285 atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac 15091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 10167233 - 10167277
Alignment:
Q  225 tcagatttacctgatgagtgttgggaatgtatattcagattcatc 269  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  10167233 tcagatttacctgacgaatgttgggaattgatattcagattcatc 10167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 10616245 - 10616213
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattca 261  Q
    |||||||||||||||||||||||||||| ||||    
T  10616245 atttacctgatgagtgttgggaatgtatcttca 10616213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University