View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_high_4 (Length: 414)

Name: NF19868_high_4
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_high_4
NF19868_high_4
[»] chr8 (4 HSPs)
chr8 (139-399)||(22687642-22687921)
chr8 (290-353)||(11550278-11550340)
chr8 (290-353)||(11545590-11545653)
chr8 (309-370)||(11562916-11562980)
[»] chr5 (3 HSPs)
chr5 (137-282)||(27472180-27472325)
chr5 (330-399)||(27472321-27472390)
chr5 (17-113)||(33079013-33079110)
[»] chr3 (3 HSPs)
chr3 (137-230)||(24263481-24263574)
chr3 (243-374)||(19859586-19859716)
chr3 (139-192)||(19859478-19859531)
[»] chr6 (1 HSPs)
chr6 (309-345)||(34407717-34407753)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 139 - 399
Target Start/End: Complemental strand, 22687921 - 22687642
Alignment:
Q  139 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22687921 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatcaa 22687822  T
Q  239 att------------------gatatctgaatttttatcaatgaaattctaatc-aagtgctaaattattttgttccagttaggtaagttaaaacattac 319  Q
     ||                  ||||||||||||||| ||||||||| ||||||| |||||| ||||||| |||||| |||| ||||||| ||||||| |     
T  22687821 ttttattttacatgaaagtgtgatatctgaatttttttcaatgaaaatctaatccaagtgcaaaattatattgttctagttgggtaagtcaaaacatcat 22687722  T
Q  320 caatttcatttgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatg 399  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22687721 taatttcatttgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatg 22687642  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 11550278 - 11550340
Alignment:
Q  290 ttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaactctattaatgg 353  Q
    |||||||||||||| || | |||||||||||| ||||||||| |||||||||||||||||||||    
T  11550278 ttgttccagttagggaact-aaaacattaccactttcatttgttatagtaaactctattaatgg 11550340  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 11545590 - 11545653
Alignment:
Q  290 ttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaactctattaatgg 353  Q
    ||||||||||| || ||  |||||||| |||| ||||||||| ||||||||| |||||||||||    
T  11545590 ttgttccagttgggaaatctaaaacatcaccactttcatttgttatagtaaaatctattaatgg 11545653  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 11562980 - 11562916
Alignment:
Q  309 taaaacattaccaatttcatttgctatagtaaactctattaa---tggcattgaaagtaatttta 370  Q
    |||||||| |||| ||||||||| ||||||||| ||||||||   ||||||||||||| ||||||    
T  11562980 taaaacatcaccactttcatttgttatagtaaaatctattaatggtggcattgaaagttatttta 11562916  T

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Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 27472180 - 27472325
Alignment:
Q  137 tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatc 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27472180 tgcttttacttgattattacataggaacatagttatcaattggtaccttcttataggaatgtagtcagctatttagaacagtggatctttccttcatatc 27472279  T
Q  237 aaattgatatctgaatttttatcaatgaaattctaatcaagtgcta 282  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||    
T  27472280 aaatcgatatctgaatttttatcaatgaaattttaatcaagtgcta 27472325  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 27472321 - 27472390
Alignment:
Q  330 tgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27472321 tgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacttatg 27472390  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 33079110 - 33079013
Alignment:
Q  17 agagagggcgtggtgtgaacgattattctcnnnnnnn-agcaatgaatgattattctcttgttcagcagttatttatggagcttttatattcatgttc 113  Q
    ||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079110 agagagggcgtggtgtgaacgattattctcttttttttaccaatgaatgattattctcttgttcagcagttatttatggagcttttatattcatgttc 33079013  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 24263481 - 24263574
Alignment:
Q  137 tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttcctt 230  Q
    ||||||||||| |||| ||  |||||||| ||||||||||||||||   |||| || |||||||  | |||||||||||| |||||||||||||    
T  24263481 tgcttttactttattactatgtagaaacacagttatcaattggtaccaacttgaagaaatgtagctaactatttagaacactggatctttcctt 24263574  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 374
Target Start/End: Original strand, 19859586 - 19859716
Alignment:
Q  243 atatctgaatttttatcaatgaaattctaatcaagtgctaaattattttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaac 342  Q
    |||||||||||| ||||||| |||||   |||| ||||| | |||  |||||||| || || ||| || ||||| |||| |||||||| |||| ||||||    
T  19859586 atatctgaatttatatcaattaaattgatatcatgtgctgacttacattgttccatttgggaaagctagaacataaccattttcattttctat-gtaaac 19859684  T
Q  343 tctattaatggcattgaaagtaattttaaatt 374  Q
    || |||| ||||||||||||| |||| |||||    
T  19859685 tccattagtggcattgaaagtgatttaaaatt 19859716  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 19859478 - 19859531
Alignment:
Q  139 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtag 192  Q
    |||||||||||||||| |||||||| |||||||||| ||||||| | |||||||    
T  19859478 cttttacttgattattgcatagaaatatagttatcagttggtacctgcttgtag 19859531  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 34407753 - 34407717
Alignment:
Q  309 taaaacattaccaatttcatttgctatagtaaactct 345  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  34407753 taaaacattaccaatttcatttgccatagtgaactct 34407717  T

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