View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19868_high_6 (Length: 365)
Name: NF19868_high_6
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19868_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 34014636 - 34014981
Alignment:
| Q |
1 |
tttcgttaacatcggaagaaggcggtgttcttgcagtagttgaagttcttgaaaatggaaatccacaaagtaaagaacatgctgttggaacattgttgag |
100 |
Q |
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| T |
34014636 |
tttcattaacatcggaagaaggcggtgttcttgcagtagttgaagttcttgaaaatggaaatccacaaagtaaagaacatgctgttggaacattgttgag |
34014735 |
T |
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| Q |
101 |
aatgtgtcaaagagataggtgtaaatatagggaaccaattttaagagaaggtgttattccaggacttcttgaactaactgttcaaggaacaacaaaatct |
200 |
Q |
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| T |
34014736 |
aatgtgtcaaagtgataggtgtaaatatagggaaccaattttaagcgaaggtgtaattccaggacttcttgaactaactgttcaaggaacaacaaagtct |
34014835 |
T |
|
| Q |
201 |
aaggcaaaatcatgtacacttttgcagctactaagagattctgatgttgaaacaagatgtgaaattgaaggtgagactcttgagaacatagtgtatgata |
300 |
Q |
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| T |
34014836 |
aaggcaaaatcatgtacacttttgcagctactaagagattctgatgttgaaacaagatgtgaaattgaaggtgagactcttgagaacatagtgtatgata |
34014935 |
T |
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| Q |
301 |
ttatatctcagattgattgtgatgaacaatttggtaaagcaaagaa |
346 |
Q |
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| T |
34014936 |
ttatatctcagattgatggtgatgaacaatttggtaaagcaaagaa |
34014981 |
T |
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Back To:
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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 30298410 - 30298592
Alignment:
| Q |
9 |
acatcggaagaaggcggtgttcttgcagtagttgaagttcttgaaaatggaaatccacaaagtaaagaacatgctgttggaacattgttgagaatgtgtc |
108 |
Q |
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| T |
30298410 |
acatccgaggaaggtggtattcttgcagttgtggaggttctcgaaaacggcactctccaaagtagggaacatgctgttggaacactattgacaatgtgcc |
30298509 |
T |
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| Q |
109 |
aaagagataggtgtaaatatagggaaccaattttaagagaaggtgttattccaggacttcttgaactaactgttcaaggaaca |
191 |
Q |
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| T |
30298510 |
aaagcgatcgatgtaaatacagggaaccgattcttagagaaggtgtcattccaggactacttgagctcactgttcaaggaaca |
30298592 |
T |
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