View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_low_1 (Length: 1053)

Name: NF19868_low_1
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_low_1
NF19868_low_1
[»] chr3 (4 HSPs)
chr3 (16-563)||(42242027-42242576)
chr3 (739-1038)||(42245988-42246287)
chr3 (559-719)||(42245786-42245946)
chr3 (886-1021)||(31071670-31071805)
[»] chr1 (1 HSPs)
chr1 (902-1021)||(19991833-19991952)
[»] scaffold0867 (1 HSPs)
scaffold0867 (923-1024)||(419-520)
[»] chr7 (2 HSPs)
chr7 (923-1024)||(22243781-22243882)
chr7 (923-1004)||(45195562-45195643)
[»] chr4 (2 HSPs)
chr4 (892-1021)||(23562955-23563084)
chr4 (892-1017)||(48264638-48264763)
[»] chr8 (1 HSPs)
chr8 (937-1024)||(5187905-5187992)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Original strand, 42242027 - 42242576
Alignment:
Q  16 atactaggaataaaggggcattggacccatgtgtttgtcttttcaattaggtctccttnnnnnnnnnnnnnnnnttaggtctcccgccagaggcatccac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||    
T  42242027 atactaggaataaaggggcattggacccatgtgtttgtcttttcaattaggtctccttaaaaaataaaaataaattaggtctcccgccagaggcatccac 42242126  T
Q  116 aatccattcaatctagcaccgtggaccatactttttattgcttgcaaaattcaaataattccacatgtttgtcgcaaagattcaattaatatgatttcaa 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42242127 aatccattcaatctagcaccgtggtccatactttttattgcttgcaaaattcaaataattccacatgtttgtcgcaaagattcaattaatatgatttcaa 42242226  T
Q  216 tgtaaccattttcttggttagtttccgtgccatgccattgtaggagcaacaattccacacgctttgttatcttagttttgcttttcacttttgtatgatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42242227 tgtaaccattttcttggttagtttccgtgccatgccattgtaggagcaacaattccacacgctttgttatcttagttttgcttttcacttttgtatgatt 42242326  T
Q  316 acattggaattctctcgagcacacaagctctttccattgcaattaga-gaag---nnnnnnnnntatgagatgatggagagtcaacccacacgtcaatag 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||             |||||||||||||||| ||||||||||||||||||    
T  42242327 acattggaattctctccagcacacaagctctttccattgcaattagaggaaggaaaaaaaaaaaaatgagatgatggagagccaacccacacgtcaatag 42242426  T
Q  412 aacatgnnnnnnnnnntatgttaggtctataacactttttacattgaaaatgaatgaagattaaaattactttttactttacttccatttttccactttc 511  Q
    ||||||          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42242427 aacatg--aaaaaaaatatgttaggtctataacactttttacattgaaaatgtatgaagattaaaattactttttactttacttccatttttccactttc 42242524  T
Q  512 atgtgtttcgaattatatgtgctatatcacgttacgtgagggactgtttatt 563  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  42242525 atgtgtttcaaattatatgtgctatatcacgttacgtgagggactgtgtatt 42242576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-158
Query Start/End: Original strand, 739 - 1038
Target Start/End: Original strand, 42245988 - 42246287
Alignment:
Q  739 accaaaatttacagttacatttgttgagtgcaatcaagacaagaaacccttaaatttttgtttaaatacggaaaattcagatatttaataatccaaattc 838  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42245988 accaaaatttacagttacatttgttgagtgcaatcaagacaagaaacccttaaatttttgtttaaatacggaaaattcagatatttaataatccaaattc 42246087  T
Q  839 caaaaactcgtgtggttaattattaaatatgtcagctcaatcaaacaaatattaacaatttctatctaaatcaactaaccccactatgccttattgggtt 938  Q
    ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42246088 caaaaactcatgtggttaattaatacatatgtcagctcaatcaaacaaatattaacaatttctatctaaatcaactaaccccactatgccttattgggtt 42246187  T
Q  939 caaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactattaaaatgaaaaagttgt 1038  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42246188 caaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaattattaaaatgaaaaagttgt 42246287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 559 - 719
Target Start/End: Original strand, 42245786 - 42245946
Alignment:
Q  559 ttattgtaatattgttgcttgtccttgacgtaggattgcatgagaatacaatgacggtggcgtggctaaaaaatgaattggaccgtgattggaaaattta 658  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42245786 ttatagtaatattgttgcttgtccttgacgtaggattgcatgagaatacaatgacggtggcgtggctaaaaaatgaattggaccgtgattggaaaattta 42245885  T
Q  659 aaacttctctatacaaaatgccacctacgatgacagagaaggaaaagagtttggactcaaa 719  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42245886 aaacttctccatacaaaatgccacctacgatgacagagaaggaaaagagtttggactcaaa 42245946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 886 - 1021
Target Start/End: Original strand, 31071670 - 31071805
Alignment:
Q  886 aatattaacaatttctatctaaatcaactaaccccactatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaac 985  Q
    ||||| ||||||||  |||| |||||| ||||||||||||| || ||  | ||||||| | ||||||||||||||||||||||||||||||| |   |||    
T  31071670 aatatcaacaattttcatctcaatcaattaaccccactatgtctcatgagcttcaaattggtaatagtggtgtgcaatcatatgatcaagagactccaac 31071769  T
Q  986 accataatttttcactcaagatggcttggaaactat 1021  Q
    |||| ||| || |||||||| |||||||||||||||    
T  31071770 accaaaatcttgcactcaaggtggcttggaaactat 31071805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 902 - 1021
Target Start/End: Original strand, 19991833 - 19991952
Alignment:
Q  902 atctaaatcaactaaccccactatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcact 1001  Q
    |||| |||||||||||||||||||| || ||  |||||| || | |||| |||||||||||||| ||||||||||| | | ||||||| ||| || ||||    
T  19991833 atctcaatcaactaaccccactatgtctcatgaggttcatattggtaatggtggtgtgcaatcaaatgatcaagagacttcaacaccaaaatcttgcact 19991932  T
Q  1002 caagatggcttggaaactat 1021  Q
    |||| |||||||||||||||    
T  19991933 caaggtggcttggaaactat 19991952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 923 - 1024
Target Start/End: Original strand, 419 - 520
Alignment:
Q  923 tatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactatt 1022  Q
    ||||||| || |||||||||| | || |||||||||||||| | ||||||||||||   |||||||| || ||| |||||||| ||||||||||||||||    
T  419 tatgcctcatggggttcaaatgggtagtagtggtgtgcaattaaatgatcaagagcttgaaacaccacaagtttgcactcaaggtggcttggaaactatt 518  T
Q  1023 aa 1024  Q
    ||    
T  519 aa 520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 923 - 1024
Target Start/End: Original strand, 22243781 - 22243882
Alignment:
Q  923 tatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactatt 1022  Q
    ||||||| || |||||||||| | || |||||||||||||| | ||||||||||||   |||||||| || ||| |||||||| ||||||||||||||||    
T  22243781 tatgcctcatggggttcaaatgggtagtagtggtgtgcaattaaatgatcaagagcttgaaacaccacaagtttgcactcaaggtggcttggaaactatt 22243880  T
Q  1023 aa 1024  Q
    ||    
T  22243881 aa 22243882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 923 - 1004
Target Start/End: Original strand, 45195562 - 45195643
Alignment:
Q  923 tatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaa 1004  Q
    |||||||||| |||||||| | |||| ||||||||| |||| | ||||||||||||    |||| ||||||||| |||||||    
T  45195562 tatgccttatggggttcaattggatagtagtggtgtacaattaaatgatcaagagcttgcaacatcataattttgcactcaa 45195643  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 892 - 1021
Target Start/End: Complemental strand, 23563084 - 23562955
Alignment:
Q  892 aacaatttctatctaaatcaactaaccccactatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccata 991  Q
    ||||||||  |||| ||||||||||||||| |||| || ||  |||||| || | |||| |||||||||||||| ||||||||||| | | ||||||  |    
T  23563084 aacaattttcatctcaatcaactaaccccagtatgtctcatgaggttcatattggtaatggtggtgtgcaatcaaatgatcaagagacttcaacacctaa 23562985  T
Q  992 atttttcactcaagatggcttggaaactat 1021  Q
    || || |||||||| |||||||||| ||||    
T  23562984 atcttgcactcaaggtggcttggaatctat 23562955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 892 - 1017
Target Start/End: Complemental strand, 48264763 - 48264638
Alignment:
Q  892 aacaatttctatctaaatcaactaaccccactatgccttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccata 991  Q
    ||||||||  |||| |||||||||||||||||||| || ||  |||||| || | |||| || ||||||||||| ||||||||||| | | ||||| | |    
T  48264763 aacaattttcatctcaatcaactaaccccactatgtctcatgaggttcatattggtaatggttgtgtgcaatcaaatgatcaagagacttcaacactaaa 48264664  T
Q  992 atttttcactcaagatggcttggaaa 1017  Q
    || || |||||||| |||||||||||    
T  48264663 atcttgcactcaaggtggcttggaaa 48264638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 937 - 1024
Target Start/End: Original strand, 5187905 - 5187992
Alignment:
Q  937 ttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactattaa 1024  Q
    ||||||| | || |||||||||||||| | ||||||||||||   ||||| || || ||| |||||||| ||||||||||||||||||    
T  5187905 ttcaaatgggtagtagtggtgtgcaattaaatgatcaagagcttgaaacatcacaagtttgcactcaaggtggcttggaaactattaa 5187992  T

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