View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_low_13 (Length: 320)

Name: NF19868_low_13
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_low_13
NF19868_low_13
[»] chr4 (1 HSPs)
chr4 (10-303)||(22788847-22789141)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 22789141 - 22788847
Alignment:
Q  10 gtgagatgaaaaccatataatcaatgttgcggaccatatttttaaaactttgcattgaagtttgctggaacacatggtcaggagatagacttgagaagag 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22789141 gtgatatgaaaaccatataatcaatgttgcggaccatatttttaaaactttgcattgaagtttgctggaacacatggtctggagatagacttgagaagag 22789042  T
Q  110 gacacacgagaccatgttagagggactcttcgcacgaccacatatagttgtcaagattgagtttgatgtttacctctttgatttgatgtagctgtctcta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22789041 gacacacgagaccatgttagagggactcttcgcacgaccacatatagttgtcaagattgagtttgatgtttacctctttgatttgatgtagttgtctcta 22788942  T
Q  210 atatgtactaaaatgactcttcattcatcaacttgttcaaatttttatgtgatgtgtgaaggatcaatggtgcct-atcaaaggataagtaatct 303  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  22788941 atatgtactaaaatgactcttcattcatcaagttgttcaaatttttatgtgatgtgtgaaggatcaatggtgcctaatgaaaggataagtaatct 22788847  T

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