View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19868_low_15 (Length: 287)

Name: NF19868_low_15
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19868_low_15
NF19868_low_15
[»] chr4 (7 HSPs)
chr4 (17-272)||(38227331-38227583)
chr4 (13-272)||(38214904-38215163)
chr4 (13-271)||(38248942-38249197)
chr4 (47-272)||(38254091-38254313)
chr4 (115-270)||(38243893-38244048)
chr4 (115-272)||(38221045-38221202)
chr4 (134-272)||(38238944-38239082)
[»] chr7 (1 HSPs)
chr7 (63-272)||(15912984-15913190)
[»] chr6 (3 HSPs)
chr6 (86-271)||(17455627-17455812)
chr6 (47-271)||(17434491-17434709)
chr6 (239-272)||(18559535-18559568)
[»] chr1 (1 HSPs)
chr1 (151-270)||(21546417-21546536)
[»] scaffold0083 (1 HSPs)
scaffold0083 (167-267)||(47089-47189)
[»] chr2 (3 HSPs)
chr2 (151-260)||(11484993-11485102)
chr2 (157-271)||(11472319-11472433)
chr2 (151-270)||(11478712-11478831)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 38227331 - 38227583
Alignment:
Q  17 ccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctaacatcttctg 116  Q
    |||||||| |||| |||  ||||| | || |||||||||||||| || ||||||||||||||||   |||||||||||||| ||||||||||||||||||    
T  38227331 ccaaagtattgtgaaatagcatttccctggcatatgccactgttccttacaagaacatgatcag---agttttgaagcatcatgtggctaacatcttctg 38227427  T
Q  117 tgtgtgtgacatattttctttgataatgtctttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttc 216  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38227428 tgtgtgtgacatattttctttgataatgtctttgaacaagccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttc 38227527  T
Q  217 agcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38227528 agcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataat 38227583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 38214904 - 38215163
Alignment:
Q  13 aaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctaacatct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  38214904 aaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctatcattt 38215003  T
Q  113 tctgtgtgtgtgacatattttctttgataatgtctttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaacta 212  Q
    ||||||||||| |||| ||||||||||| || ||||  |||| |||||||||| ||||| ||||||||||| ||||||||||||||| | |||||||| |    
T  38215004 tctgtgtgtgtaacatgttttctttgatgatatcttccaacagcccaatgatgaagataagtttcatggaggggtataggattaccatcttcatcaacaa 38215103  T
Q  213 cttcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataat 272  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  38215104 cttcagcattgaaactcttgagtgctacatgacctcttggaaaatcaatatcataataat 38215163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 38248942 - 38249197
Alignment:
Q  13 aaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctaacatct 112  Q
    |||||||||||| |||||||||  |||| | || |||||||||||||| || |||||||||||||||    |||||||||||||| |||||||| |||||    
T  38248942 aaggccaaagtattgtggaatggtatttccctggcatatgccactgttccttacaagaacatgatcat---agttttgaagcatcatgtggctaccatct 38249038  T
Q  113 tctgtgtgtgtgacatattttctttgataatgtctttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaacta 212  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |    
T  38249039 tctgtgtgtgtgacatattttctttgataatgtcattcaacaagccaatgatggagataggtttcatggaggggtataggattaccatcttcatcaacaa 38249138  T
Q  213 cttcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataa 271  Q
    ||||||||||||||||||| |||||||||||  | |||||||||||||||| |||||||    
T  38249139 cttcagcattgaaactcttgagtgctatatgatcacttggaaaatcaatataataataa 38249197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 272
Target Start/End: Original strand, 38254091 - 38254313
Alignment:
Q  47 catatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtc 146  Q
    ||||||||||||||||||||||||||||||||||   ||||||| |||||| |||||||| ||| |||||||||||| |||| ||||||||||| || ||    
T  38254091 catatgccactgtttctcacaagaacatgatcag---agttttgtagcatcatgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatc 38254187  T
Q  147 tttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccc 246  Q
    ||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||  ||| | ||||||||| ||    
T  38254188 ttccaacaacccaatgatggagataagtttcatggagaggtataggatttccagattcatcaactacttcagcatggaaatccttgattgctatatggcc 38254287  T
Q  247 tcttggaaaatcaatatcataataat 272  Q
    ||||||||||||||||||||||||||    
T  38254288 tcttggaaaatcaatatcataataat 38254313  T

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Target: chr4; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 38243893 - 38244048
Alignment:
Q  115 tgtgtgtgtgacatattttctttgataatgtctttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactact 214  Q
    |||||||||||||| ||| ||||||| || ||||  |||| |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  38243893 tgtgtgtgtgacatgtttactttgatgatatcttccaacaccccaatgatggagataagtttcatggagaggtataggattaccaacttcatcaactact 38243992  T
Q  215 tcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataata 270  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  38243993 tcagcattgaaactcttgagtgcaatatgacctcttggaaaatcaatatcataata 38244048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 38221045 - 38221202
Alignment:
Q  115 tgtgtgtgtgacatattttctttgataatgtctttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactact 214  Q
    |||||||||||||| ||| ||||||| || ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||| | ||||||||||||    
T  38221045 tgtgtgtgtgacatgtttactttgatgatatctttcaacaacccaatgatgaagataagtttcatggaggggtataggattaccatcttcatcaactact 38221144  T
Q  215 tcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataat 272  Q
    ||||||| ||||||||| | ||||| ||| ||||||||||||||||||||||||||||    
T  38221145 tcagcatggaaactcttgattgctacatgacctcttggaaaatcaatatcataataat 38221202  T

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Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 38238944 - 38239082
Alignment:
Q  134 ctttgataatgtctttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactcttta 233  Q
    ||||||| || ||||  ||||| ||||||||||||||| |||||||||||||||| |||||| || |  || |||||||||||||||||||||||||| |    
T  38238944 ctttgatgatatcttacaacaagccaatgatggagataagtttcatggagaggtacaggattccctgattcgtcaactacttcagcattgaaactcttga 38239043  T
Q  234 gtgctatatgccctcttggaaaatcaatatcataataat 272  Q
    |||||| ||| |||||||||||| |||||||||||||||    
T  38239044 gtgctacatgacctcttggaaaaccaatatcataataat 38239082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 15913190 - 15912984
Alignment:
Q  63 tcacaagaacatgatcagcagagttttgaagcatcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaacccaatg 162  Q
    |||||||||||||||||    || ||||||||||| |||||||| ||| ||||||||||||| | | ||| ||||| |  | | ||  |||| |||||||    
T  15913190 tcacaagaacatgatcaa---agctttgaagcatcatgtggctatcattttctgtgtgtgtggcgtgtttgctttgttgttattttacaacagcccaatg 15913094  T
Q  163 atggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctcttggaaaatcaata 262  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||| |||| ||  | ||||||||||| |||||||| || ||||||||||||||||||    
T  15913093 atggaaataggtttcatggagaggtataggattaccaacttcatcagctacctcgtcgttgaaactcttgagtgctatgtgacctcttggaaaatcaata 15912994  T
Q  263 tcataataat 272  Q
    | ||| ||||    
T  15912993 ttatattaat 15912984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 271
Target Start/End: Original strand, 17455627 - 17455812
Alignment:
Q  86 ttttgaagcatcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaacccaatgatggagataggtttcatggagag 185  Q
    |||||||||||| |||| ||| ||| ||||||||||||| |||  || ||||||| || ||||  ||||||||||||||||||||| ||||| || |  |    
T  17455627 ttttgaagcatcttgtgactatcattttctgtgtgtgtggcatgattactttgatgatatcttccaacaacccaatgatggagataagtttcgtgcaacg 17455726  T
Q  186 gtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcataataa 271  Q
    |||| | ||| ||||| |||||||| ||||||||||  |||||||| | ||||| ||| ||| |||||||||||||||||| ||||    
T  17455727 gtatcgaattcccagcttcatcaacaacttcagcatcaaaactcttgattgctacatgaccttttggaaaatcaatatcatcataa 17455812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 271
Target Start/End: Original strand, 17434491 - 17434709
Alignment:
Q  47 catatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtc 146  Q
    ||||||||| |||| || |||||||||| |||||   |||||||||||||||| |||||| ||| |||||||| |||||||| |   ||| ||| || ||    
T  17434491 catatgccattgttccttacaagaacataatcag---agttttgaagcatcctatggctatcattttctgtgtatgtgacatgt---cttagatgatatc 17434584  T
Q  147 tttgaacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccc 246  Q
    ||  ||||||||||||||| ||||| ||||| || |  ||||| | ||| ||||| |||||||| ||||| ||||  |||||||| | ||||| ||| ||    
T  17434585 ttgcaacaacccaatgatgaagataagtttcgtgcaacggtatcgaattcccagcttcatcaacaacttctgcatcaaaactcttgattgctacatgacc 17434684  T
Q  247 tcttggaaaatcaatatcataataa 271  Q
    | |||||||||||||||||||||||    
T  17434685 ttttggaaaatcaatatcataataa 17434709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 18559535 - 18559568
Alignment:
Q  239 atatgccctcttggaaaatcaatatcataataat 272  Q
    ||||| ||||||||||||||||||||||||||||    
T  18559535 atatgacctcttggaaaatcaatatcataataat 18559568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 21546536 - 21546417
Alignment:
Q  151 aacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctctt 250  Q
    ||||| |||||| || ||||| |||| ||  |||||||||| ||| || |||||||||||||  ||||||||||||||||| ||||  ||||| ||||||    
T  21546536 aacaatccaatggtgtagataagtttgataaagaggtatagaattccctgcatcatcaactagctcagcattgaaactcttgagtgaaatatgacctctt 21546437  T
Q  251 ggaaaatcaatatcataata 270  Q
    ||||| |||| |||||||||    
T  21546436 ggaaactcaacatcataata 21546417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 47189 - 47089
Alignment:
Q  167 agataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctcttggaaaatcaatatcat 266  Q
    ||||| |||| ||| ||||||| || ||| || || |||||||||| |||||||||||||||||| ||||  ||||| ||||||||||| |||| |||||    
T  47189 agataagtttgatgaagaggtacagaatttcctgcttcatcaactagttcagcattgaaactcttgagtgaaatatggcctcttggaaactcaacatcat 47090  T
Q  267 a 267  Q
    |    
T  47089 a 47089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 11485102 - 11484993
Alignment:
Q  151 aacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctctt 250  Q
    ||||| ||||||||| ||||| |||| |||||||||||  | ||| || |  |||| |||||||||||||  ||||||||| ||||  ||||| ||||||    
T  11485102 aacaatccaatgatgtagataagtttgatggagaggtactgaattccctgattcattaactacttcagcaaagaaactcttgagtgaaatatgacctctt 11485003  T
Q  251 ggaaaatcaa 260  Q
    ||||||||||    
T  11485002 ggaaaatcaa 11484993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 11472433 - 11472319
Alignment:
Q  157 ccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctcttggaaaa 256  Q
    |||||| || ||||| |||| |||||||||||  | ||| || |  |||| |||||||||||||  ||||||||| ||||  ||||| ||||||||||||    
T  11472433 ccaatggtgtagataagtttgatggagaggtactgaattccctgattcattaactacttcagcaaagaaactcttaagtgaaatatgacctcttggaaaa 11472334  T
Q  257 tcaatatcataataa 271  Q
    |||  ||||||||||    
T  11472333 tcagcatcataataa 11472319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 11478831 - 11478712
Alignment:
Q  151 aacaacccaatgatggagataggtttcatggagaggtataggattaccagcatcatcaactacttcagcattgaaactctttagtgctatatgccctctt 250  Q
    |||||||||||| || ||||| |||| |||||||||||| | ||  || |  ||||||||||||||||||  |||| | || | ||  ||||| || |||    
T  11478831 aacaacccaatggtgtagataagtttgatggagaggtattgaatgccctgattcatcaactacttcagcaaagaaatttttgactgaaatatgaccactt 11478732  T
Q  251 ggaaaatcaatatcataata 270  Q
    |||||||||| |||||||||    
T  11478731 ggaaaatcaacatcataata 11478712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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