View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19868_low_16 (Length: 284)
Name: NF19868_low_16
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19868_low_16 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 6437075 - 6437326
Alignment:
| Q |
31 |
ttacatgtctccaaaaatatgtcaaactcagcnnnnnnnnggagttacggccatatctaatgttagagatcagggaccattataacagcgaggtgcatat |
130 |
Q |
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| T |
6437075 |
ttacatgtctccaaaaatatgtcaa-ctcagcttttttgtggagttacggccaaatctaatgttagagatcacggaccattataacagtgagttgcatat |
6437173 |
T |
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| Q |
131 |
tcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttactttgtttctttctttatgtgctgtcttatgcttattacac |
230 |
Q |
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| T |
6437174 |
tcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttaatttgtttctttc-ttatgttttgttctatgcttattacac |
6437272 |
T |
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| Q |
231 |
aatttgtttgatagtgatttattgaatttgaaacttttaaatagataacttttt |
284 |
Q |
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| T |
6437273 |
aatttgtttgatagtgatttattgaatttgaaacttttaaatagataacttttt |
6437326 |
T |
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Target: scaffold0340 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 18898 - 18724
Alignment:
| Q |
106 |
accattataacagcgaggtgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttactttgtttctttcttt |
205 |
Q |
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| T |
18898 |
accattatgacagcgaggtgcacattcgtaaactaaaatgattgtttaccgtcattttaataaaatataattatttta-ttttactttgtttctttc-tt |
18801 |
T |
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| Q |
206 |
atgtgctgtcttatgcttattacacaatttgtttgatagtgatttattgaatttgaaacttttaaatagataacttttt |
284 |
Q |
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| T |
18800 |
atgctatgtcctatgcttactacacaatttgtttgaaagtgattcgttgaatttgaaacgtt--aatagataacttttt |
18724 |
T |
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