View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19868_low_4 (Length: 499)
Name: NF19868_low_4
Description: NF19868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19868_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 103 - 476
Target Start/End: Complemental strand, 36136791 - 36136418
Alignment:
| Q |
103 |
tggatatgatcagggctgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccc |
202 |
Q |
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| T |
36136791 |
tggatatgatcagggctgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccc |
36136692 |
T |
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| Q |
203 |
tcttagagaaccaatcacaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataa |
302 |
Q |
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| T |
36136691 |
tcttagagaaccaatcacaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaatag |
36136592 |
T |
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| Q |
303 |
ttagttacaaatataattgaatcaatgtcatatggcacactggccacaaagaaataaccatatagatacctggttgctcatttttccgtctgtaatgatt |
402 |
Q |
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| T |
36136591 |
ttagttacaaatataactgaatcaatgtcatatggcacactggccacaaagaaataaccatatagatacctggttgctcatttttccgtctgtaatgatt |
36136492 |
T |
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| Q |
403 |
ttgaccacagctggaaaacctttccctagaaaattgaatacagaagcaacaagaataggtcggtccactttctc |
476 |
Q |
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| T |
36136491 |
ttgaccacagctggaaaacctttccctagaaaattgaatacagaaacaacaagaataggtcggtccactttctc |
36136418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 36136879 - 36136845
Alignment:
| Q |
15 |
aatataaaggtatgttaaataagcactatagtggt |
49 |
Q |
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| T |
36136879 |
aatataaaggtatgttaaataagcactatagtggt |
36136845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 119 - 323
Target Start/End: Complemental strand, 41339643 - 41339447
Alignment:
| Q |
119 |
tgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccctcttagagaaccaatc |
218 |
Q |
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| T |
41339643 |
tgatctggagaattgtccgaattttcttgctcattaacagaactacttgagccttcaacttgacgtgatgcttcttctttaccctctaagagaaccaagc |
41339544 |
T |
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| Q |
219 |
acaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataattagttacaaatataa |
318 |
Q |
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| T |
41339543 |
acaagcaaaggcac--------ttattataatccatagttttatatttataatgatatcctcatgaaaagttatagagaaatagtttgttacaaatctaa |
41339452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 41339449 - 41339373
Alignment:
| Q |
353 |
gaaataaccatatagatacctggttgctcatttttccgtctgtaatgattttgaccacagctggaaaacctttccct |
429 |
Q |
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| T |
41339449 |
gaaataaccatttagatacctggttgctcatttttccatctgcaatgatttcgaccacggctggaaaacctttccct |
41339373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 245 - 425
Target Start/End: Complemental strand, 22630048 - 22629871
Alignment:
| Q |
245 |
tataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataattagttacaaatataattgaatcaatgtcatatggcacactg |
344 |
Q |
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| T |
22630048 |
tataatcaatagttatatatttataatgatatccttatgaaaaatttaagtgaaaaagttagttacaaatctaactgaatcaatgtcatatgacacattg |
22629949 |
T |
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| Q |
345 |
gccacaaagaaataaccatatagatacctggttgctcatttttccgtctgtaatgattttgaccacagctggaaaaccttt |
425 |
Q |
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| T |
22629948 |
gccacaaagaaagagccatatagatacacggtttctaattt---cttctgtaatgatttcgaccaaggctggaaaaccttt |
22629871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 424
Target Start/End: Original strand, 22630092 - 22630255
Alignment:
| Q |
259 |
atatatttataatgatatccgcatcaaaa-gttaaagaaaaataattagttacaaatataattgaatcaatgtcatatggcacactggccacaaagaaat |
357 |
Q |
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| T |
22630092 |
atatatttataatgatatcctcatcaaaaaggtaaagtgaaaaatttagttacaaatctaaatgattcaatgtcatatgacaaactgaccacagagaaag |
22630191 |
T |
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| Q |
358 |
aaccatatagatacctggttgctcatttttccgtctgtaatgattttgaccacagctggaaaacctt |
424 |
Q |
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| T |
22630192 |
agccatatagatacatggcttctcatttt---atctctaatgatttcgaccatggctggaaaacctt |
22630255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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