View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19869_high_1 (Length: 1059)
Name: NF19869_high_1
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 960; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 22 - 1045
Target Start/End: Complemental strand, 39239932 - 39238908
Alignment:
| Q |
22 |
aaggcatcaccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239932 |
aaggcatcaccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctg |
39239833 |
T |
|
| Q |
122 |
accaatttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239832 |
accaatttgatgactttgatcccaaagagaaatccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccac |
39239733 |
T |
|
| Q |
222 |
tttcttggtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaaca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239732 |
tttcttggtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaaca |
39239633 |
T |
|
| Q |
322 |
ccatattatagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaag |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239632 |
ccatattatagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaag |
39239533 |
T |
|
| Q |
422 |
ataaaaaggagctccatgagctgagtatggaagagtatacatgtaatggtagaaccagaattgatcacacgtcgtttttcaggttgagtctaattacttt |
521 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239532 |
ataaaaaggagctacatgagctgagtatggaagagtatacatgtaatggtagaaccagaattgatcacacgtcgtttttcaggttgagtctaattacttt |
39239433 |
T |
|
| Q |
522 |
tatctcctaaaaatgtgtccttggtgtggtgacaacgcaannnnnnncactgcac-aatctcactaaattttgttggtcttttacaaatttggtggcgtc |
620 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239432 |
tatctcctaaaaatgtgtccatggtgtggtgacaacacaatttttttcactgcacgagtctcgctaaattttgttggtcttttacaaatttggtggcgtc |
39239333 |
T |
|
| Q |
621 |
catacgaatatcaatcaatataatagattgttaaagactgtatactgctaacattatttatttgtttttacatgaaacgaaaatttggcttgaactagct |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239332 |
catacgaatatcaatcaatataatagattgttaaagactgtatactgctaacattatttaattgtttttacatgaaacgaaaatttggcttgaactagct |
39239233 |
T |
|
| Q |
721 |
attgtgcatactcatcctcctctctgcttgcagcttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaa |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39239232 |
attgtgcatactcatcctcctctctgcttgcagtttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtgacacaa |
39239133 |
T |
|
| Q |
821 |
attgaggaaactaagcaaatgacaaaactggttcctatttcgattttcacaattattccaagcaccttgggaatgcacattttcacactcttcgttaaac |
920 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239132 |
attgaggaaactaagcaaatgacaaaactggttcctatttcgattttcacaattattccaagcaccttgggaatgcacattttcacactcttcgttaaac |
39239033 |
T |
|
| Q |
921 |
aaggcatgacactggacaacaaaatgggacctcgttttaatatctctccaggaagtctctcgtcaattacaattatcttcatgttgatattcattgcaat |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39239032 |
aaggcatgacactggacaacaaaatgggacctcgttttaatatctctccaggaagtctctcgtcaattacaattatcttcatgttgatattcattgcaat |
39238933 |
T |
|
| Q |
1021 |
ctatgattgtatttttgtgcctatg |
1045 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39238932 |
ctatgattgtatttttgtgcctatg |
39238908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 29 - 522
Target Start/End: Complemental strand, 39257732 - 39257239
Alignment:
| Q |
29 |
caccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgaccaatt |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| ||| | |||||| ||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
39257732 |
caccattgcaaaagggtgttttcttccttgccttatacaccatttctctaggcaatggtggaaccaaggccaacatttctactctgggagcagaccaatt |
39257633 |
T |
|
| Q |
129 |
tgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccactttcttg |
228 |
Q |
| |
|
||| || |||||| ||||||||| | | ||||| | || || |||||||||||||||| ||||||||| || || | |||||| | | |||| ||||| |
|
|
| T |
39257632 |
tgacgagtttgataccaaagagagattctataagctctcttttttcaattggtggttttctagcattttaatcggcatgcttttttccagcactatcttg |
39257533 |
T |
|
| Q |
229 |
gtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacaccatatt |
328 |
Q |
| |
|
|||||||||||||||||| | ||||||| || ||||| || |||||||||||||||||||| |||||||| | |||||| ||||||| |||| || |
|
|
| T |
39257532 |
gtttacatacaagacaatgtgggttggggcctcggatacggacttccaaccattggccttgctgtttcaataataacgttttttgtaggaacgccatttt |
39257433 |
T |
|
| Q |
329 |
atagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaagataaaaa |
428 |
Q |
| |
|
|||| || | ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||| ||| | ||| ||| |
|
|
| T |
39257432 |
ataggcatagatttccctcaggcagccctataacaaggatgcttcaagtctttgtggctgctatgagaaaatggaagacgcatgttccaaatgatccaaa |
39257333 |
T |
|
| Q |
429 |
ggagctccatgagctgagtatggaagagtatacatgtaatggtagaaccagaattgatcacacgtcgtttttcaggttgagtctaattactttt |
522 |
Q |
| |
|
| | |||||||| ||||| ||||||||| ||||||| | ||||| || |||||| ||||| || || || ||||||| || |||||||||| |
|
|
| T |
39257332 |
actgttacatgagctaagtatagaagagtatgcatgtaacgctagaaacaaaattgaacacacatctttcttgaggttgaatcgaattactttt |
39257239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 22 - 487
Target Start/End: Complemental strand, 39178043 - 39177578
Alignment:
| Q |
22 |
aaggcatcaccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctg |
121 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| || |||| |||||||||| || ||||| || ||||||||||| |||||||| | |
|
|
| T |
39178043 |
aaggcatcaacattgcaaaagggtattttcttccttgccctgtatatcattgccgtaggcacaggggggaccaagccaaacatttctacaatgggagcag |
39177944 |
T |
|
| Q |
122 |
accaatttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccac |
221 |
Q |
| |
|
|||||||||| || || || |||||||||| | || ||||| | || ||||||||||||||||||||||| ||||| | ||| ||| || | | ||| |
|
|
| T |
39177943 |
accaatttgacgagttcgagcccaaagagagatcctataagctttctttcttcaattggtggttttttagtattttcctgggtaccctattctccaacac |
39177844 |
T |
|
| Q |
222 |
tttcttggtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaaca |
321 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||| |||| || ||||||||||||||||| |||| |||||||||| || ||| | ||||||| |
|
|
| T |
39177843 |
tttcttaatttacatacaagacaatgtgggttgggctgttgggtacggccttccaaccattggacttggtatttcaatatttgtttttatggtaggaact |
39177744 |
T |
|
| Q |
322 |
ccatattatagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaag |
421 |
Q |
| |
|
|||| ||||| ||||||||||| |||| |||||| | || |||||||| ||||||| ||||||| || | |||| ||||| || | |||||||||| |
|
|
| T |
39177743 |
ccattgtataggcacaaattgccctcaggaagccctttgactaggatgctccaagtctatgtggctacttttcgaaagtggaaatcatgcgtcccagaag |
39177644 |
T |
|
| Q |
422 |
ataaaaaggagctccatgagctgagtatggaagagtatacatgtaatggtagaaccagaattgatc |
487 |
Q |
| |
|
|| ||| ||||| |||||| ||||||||||||| ||| | ||||| || |||| ||||||||||| |
|
|
| T |
39177643 |
atccaaaagagctgcatgagttgagtatggaagattatgcttgtaaggggagaaacagaattgatc |
39177578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 28 - 420
Target Start/End: Complemental strand, 39216499 - 39216107
Alignment:
| Q |
28 |
tcaccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgaccaat |
127 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| |||| | |||| ||||| |||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
39216499 |
tcaccattgcaaaggggtattttcttccttgccctgtacatcattgctgtaggaacaggaggaaccaagcccaacatttctacaatgggagcagaccaat |
39216400 |
T |
|
| Q |
128 |
ttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccactttctt |
227 |
Q |
| |
|
|||| || || || |||||||||| || |||| | ||||||||||||||||||| ||| || ||||| | ||| ||| || | | ||||||| | |
|
|
| T |
39216399 |
ttgacgagttcgagcccaaagagagcacctataaactttccttcttcaattggtggtatttcagtattttcctaggtaccctattctccaacactttcgt |
39216300 |
T |
|
| Q |
228 |
ggtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacaccatat |
327 |
Q |
| |
|
| ||||||||||||| | ||||||| | |||||||||||||| |||||||| ||||| ||||| ||||||| ||| | ||||||| |||| |
|
|
| T |
39216299 |
aatctacatacaagacagagtgggttgggccgtaggatatggccttcctaccattggacttgcggtttcagtattggtatttctggtaggaactccattg |
39216200 |
T |
|
| Q |
328 |
tatagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaa |
420 |
Q |
| |
|
||||| || |||||||| ||||||||||||| || || ||||| |||||||||||||| ||||| ||||| |||| | |||| ||||||||| |
|
|
| T |
39216199 |
tataggcataaattgccctcaggcagccctatgactagaatgctacaagtctttgtggcagctatgagaaagtggatgacacgggtcccagaa |
39216107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 24 - 441
Target Start/End: Complemental strand, 39194804 - 39194387
Alignment:
| Q |
24 |
ggcatcaccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgac |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||||| |||| | |||| ||||| ||||| || || ||||||||||| |||||||| ||| |
|
|
| T |
39194804 |
ggcatcaccattgcaaaggggtattttcttcctagccctgtacatcattgctgtaggaacaggaggaacaaagcctaacatttctacgatgggagcagac |
39194705 |
T |
|
| Q |
124 |
caatttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccactt |
223 |
Q |
| |
|
|||||||| || || || |||||||||| || |||| | ||||||||||||||||||| ||| || ||||| | ||| ||| || | | ||||| |
|
|
| T |
39194704 |
caatttgacgagttcgagcccaaagagaggacctataaactttccttcttcaattggtggtatttcagtattttcctaggtaccctattctccaacactt |
39194605 |
T |
|
| Q |
224 |
tcttggtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacacc |
323 |
Q |
| |
|
|| | | ||||||||||||| | ||||||| | |||||||||||||| || ||| ||||| ||||| |||| |||||||| ||||||| || |
|
|
| T |
39194604 |
tcgtaatctacatacaagacagagtgggttgggccgtaggatatggccttcctacggctggacttgcggtttcagtattagtgtttttggtaggaactcc |
39194505 |
T |
|
| Q |
324 |
atattatagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaagat |
423 |
Q |
| |
|
|| ||||| || |||||||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||| | |||| |||||||||||| |
|
|
| T |
39194504 |
attgtataggcataaattgccctcaggcagccctataactagaatgctccaagtctttgtggcagctatgagaaagtggatgacacgggtcccagaagat |
39194405 |
T |
|
| Q |
424 |
aaaaaggagctccatgag |
441 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
39194404 |
ccaaaagagctacatgag |
39194387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 28 - 459
Target Start/End: Complemental strand, 39224117 - 39223686
Alignment:
| Q |
28 |
tcaccattgcaaaagggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgaccaat |
127 |
Q |
| |
|
||||| ||||||| |||| | |||||||||||| | ||||| ||| | |||| ||||| |||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
39224117 |
tcacccttgcaaaggggtgtattcttccttgccctatacatcgttgctgtaggaacaggaggaaccaagcccaacatttctacaatgggagcagaccaat |
39224018 |
T |
|
| Q |
128 |
ttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggtggttttttagcattttgattggtgtcctttttgctaccactttctt |
227 |
Q |
| |
|
|||| || || || || ||||||| || ||||| | |||||||||||||||||||||||||||||||| ||||| |||||| | | ||||||| | |
|
|
| T |
39224017 |
ttgacgagttcgagcctaaagagaggacctataagctttccttcttcaattggtggttttttagcattttccttggtacccttttctccaacactttcgt |
39223918 |
T |
|
| Q |
228 |
ggtttacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacaccatat |
327 |
Q |
| |
|
| ||||||||||||| | |||||| | |||||||||||||| ||| ||| |||||| ||||| ||||||||||| | ||||||| |||| |
|
|
| T |
39223917 |
aatctacatacaagacagagtcggttggaccgtaggatatggccttcctaccgctgggcttgcagtttcagtattggtgtttctggtaggaactccattg |
39223818 |
T |
|
| Q |
328 |
tatagacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaagataaaa |
427 |
Q |
| |
|
|| || || |||||||| | |||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||| | || | || ||||||||| || |
|
|
| T |
39223817 |
tacaggcataaattgccctccggcagccctataactagaatgctccaagtctttgtggcggctatgagaaaggggatgacaagggtaccagaagatccaa |
39223718 |
T |
|
| Q |
428 |
aggagctccatgagctgagtatggaagagtat |
459 |
Q |
| |
|
| ||||| |||||| | || || ||||||||| |
|
|
| T |
39223717 |
aagagctacatgagttaagaatagaagagtat |
39223686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 741 - 951
Target Start/End: Complemental strand, 39177471 - 39177261
Alignment:
| Q |
741 |
tctctgcttgcagcttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaat |
840 |
Q |
| |
|
||||| |||| || |||||||||||||| |||||||||||||| |||| || ||||||||||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
39177471 |
tctctacttgtagtttccttgacaaagcagctataaagaccggccaaacgtcgccatggatgctttgtacagtgacacaagttgaggaaaccaaacaaat |
39177372 |
T |
|
| Q |
841 |
gacaaaactggttcctatttcgattttcacaattattccaagcaccttgggaatgcacattttcacactcttcgttaaacaaggcatgacactggacaac |
940 |
Q |
| |
|
||||||| || |||||||| |||| |||||||| |||||||| ||| || || |||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
39177371 |
gacaaaaatgattcctattctgattacaacaattatgccaagcacattgatgattcaatcgaccacactcttcattaaacaaggcatcacactagacaag |
39177272 |
T |
|
| Q |
941 |
aaaatgggacc |
951 |
Q |
| |
|
| ||||||||| |
|
|
| T |
39177271 |
agaatgggacc |
39177261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 756 - 924
Target Start/End: Complemental strand, 39257166 - 39256998
Alignment:
| Q |
756 |
tccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgacaaaactggttcc |
855 |
Q |
| |
|
||||||||||||| ||| ||| || || |||| ||| |||||||||| |||||||| |||||| |||||||||| |||||||||| |||||| | || |
|
|
| T |
39257166 |
tccttgacaaagcagctgtaacaactggccaaacttcatcatggatgctatgtacagtgacacaagttgaggaaaccaagcaaatgattaaactgatacc |
39257067 |
T |
|
| Q |
856 |
tatttcgattttcacaattattccaagcaccttgggaatgcacattttcacactcttcgttaaacaagg |
924 |
Q |
| |
|
||||| |||| | |||||||||||||||||| ||| |||||| |||||||||||| |||||||||| |
|
|
| T |
39257066 |
tattttgattataacaattattccaagcaccatggtaatgcaatcattcacactcttcattaaacaagg |
39256998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 39194251 - 39194131
Alignment:
| Q |
745 |
tgcttgcagcttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgaca |
844 |
Q |
| |
|
|||||| || ||||||||||||||||||| |||||| || |||| ||| ||||||||||||||||||| |||||| |||||||||| || ||||||||| |
|
|
| T |
39194251 |
tgcttgtagtttccttgacaaagcggctacaaagacaggccaaacttcaccatggatgctttgtacagtgacacaagttgaggaaaccaaacaaatgaca |
39194152 |
T |
|
| Q |
845 |
aaactggttcctatttcgatt |
865 |
Q |
| |
|
||| || |||| |||| |||| |
|
|
| T |
39194151 |
aaaatgattccgattttgatt |
39194131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 232 - 461
Target Start/End: Complemental strand, 39245545 - 39245316
Alignment:
| Q |
232 |
tacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacaccatattata |
331 |
Q |
| |
|
||||||||||||||| |||||| | ||||| ||||| |||||||||| |||| ||||||| |||||||||||| || ||||||||| ||||| |
|
|
| T |
39245545 |
tacatacaagacaatgttggttttgcccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttata |
39245446 |
T |
|
| Q |
332 |
gacacaaattgcctccaggcagccctataacaaggatgcttcaagtctttgtggctgctataagaaaatggaaggcacgtgtcccagaagataaaaagga |
431 |
Q |
| |
|
|||| ||||||||| | || || ||| |||| || ||| ||||||||||||| |||||||| ||||| ||||| | ||||||| | ||| |||| || |
|
|
| T |
39245445 |
gacataaattgccttctggaagtcctttaactagaatggttcaagtctttgttgctgctatgagaaagtggaaattaaatgtcccaaatgatcaaaaaga |
39245346 |
T |
|
| Q |
432 |
gctccatgagctgagtatggaagagtatac |
461 |
Q |
| |
|
||| |||||| |||| || ||||||||||| |
|
|
| T |
39245345 |
gctgcatgaggtgagcattgaagagtatac |
39245316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 39215924 - 39215804
Alignment:
| Q |
745 |
tgcttgcagcttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgaca |
844 |
Q |
| |
|
|||||| || ||||||||||||||||||| |||||| || |||| ||| |||||||||||||||||| |||||| |||||||||| || ||||||||| |
|
|
| T |
39215924 |
tgcttgtagtttccttgacaaagcggctacaaagacaggccaaacttcacaatggatgctttgtacagtgacacaagttgaggaaaccaaacaaatgaca |
39215825 |
T |
|
| Q |
845 |
aaactggttcctatttcgatt |
865 |
Q |
| |
|
||| || |||| |||| |||| |
|
|
| T |
39215824 |
aaaatgattccgattttgatt |
39215804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 39223541 - 39223421
Alignment:
| Q |
745 |
tgcttgcagcttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgaca |
844 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||||| || |||| ||| | ||||||||||||||||| |||||| |||||||||| || ||||||||| |
|
|
| T |
39223541 |
tgcttgtagtttcctagacaaagcggctacgaagacaggccaaacttcaccgtggatgctttgtacagtgacacaagttgaggaaaccaaacaaatgaca |
39223442 |
T |
|
| Q |
845 |
aaactggttcctatttcgatt |
865 |
Q |
| |
|
||| || | ||||||| |||| |
|
|
| T |
39223441 |
aaaatgatacctattttgatt |
39223421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 747 - 847
Target Start/End: Complemental strand, 39260427 - 39260327
Alignment:
| Q |
747 |
cttgcagcttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgacaaa |
846 |
Q |
| |
|
||||||| |||||||||||||| ||| | ||||| || |||| ||| |||||||||||||||| || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
39260427 |
cttgcagattccttgacaaagctgctgtgaagactggccaaacttcaccatggatgctttgtactgtgacacaaattgaagaaaccaaacaaatgacaaa |
39260328 |
T |
|
| Q |
847 |
a |
847 |
Q |
| |
|
| |
|
|
| T |
39260327 |
a |
39260327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 847
Target Start/End: Complemental strand, 39250931 - 39250839
Alignment:
| Q |
755 |
ttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgacaaaa |
847 |
Q |
| |
|
|||||||||||||| || | ||||||| |||| ||| |||||||||||||||| || ||||||||||||||||| || |||||||||||| |
|
|
| T |
39250931 |
ttccttgacaaagctgcagtgaagaccgaccaaacttcaccatggatgctttgtactgtgacacaaattgaggaaacaaaacaaatgacaaaa |
39250839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 39261330 - 39261222
Alignment:
| Q |
43 |
ggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttgatc |
142 |
Q |
| |
|
|||||||||||| |||| |||||||| |||| ||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||| | |
|
|
| T |
39261330 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagtttgagc |
39261231 |
T |
|
| Q |
143 |
ccaaagaga |
151 |
Q |
| |
|
| ||||||| |
|
|
| T |
39261230 |
ctaaagaga |
39261222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 755 - 847
Target Start/End: Complemental strand, 39244996 - 39244904
Alignment:
| Q |
755 |
ttccttgacaaagcggctataaagaccggacaaaaatcaacatggatgctttgtacagtaacacaaattgaggaaactaagcaaatgacaaaa |
847 |
Q |
| |
|
|||||||||||||| || | ||||||| |||| ||| ||||||||||||| || || ||||||||||||||||| || |||||||||||| |
|
|
| T |
39244996 |
ttccttgacaaagctgcagtgaagaccgaccaaacttcaccatggatgctttgcactgtgacacaaattgaggaaacaaaacaaatgacaaaa |
39244904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 15765096 - 15765197
Alignment:
| Q |
82 |
acaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaattggt |
181 |
Q |
| |
|
|||||||||||||||||||||||||| || || || ||||||||||||||||| ||||| || ||||| ||| | |||| | || ||||||||||||| |
|
|
| T |
15765096 |
acaggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggt |
15765195 |
T |
|
| Q |
182 |
gg |
183 |
Q |
| |
|
|| |
|
|
| T |
15765196 |
gg |
15765197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 33413118 - 33413001
Alignment:
| Q |
77 |
taggcacaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttgatcccaaagagaaacccgataagttgtccttcttcaa |
176 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || || || || |||||||||||||| ||| |||| ||||| ||| | |||| | || || ||||| |
|
|
| T |
33413118 |
taggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttcatcctaaagaaaaatcacataaactttcatttttcaa |
33413019 |
T |
|
| Q |
177 |
ttggtggttttttagcat |
194 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
33413018 |
ttggtggatgtttagcat |
33413001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 15728656 - 15728714
Alignment:
| Q |
82 |
acaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttga |
140 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| ||||| |
|
|
| T |
15728656 |
acaggtggaacaaaacctaacatttccactattggtgctgatcaatttgatgagtttga |
15728714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 15778761 - 15778819
Alignment:
| Q |
82 |
acaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttga |
140 |
Q |
| |
|
||||||||||||||||| |||||||| || || || |||||||| |||||||| ||||| |
|
|
| T |
15778761 |
acaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttga |
15778819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University