View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_high_3 (Length: 477)
Name: NF19869_high_3
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6706566 - 6706738
Alignment:
| Q |
1 |
catgatgaacaaagagaagacttattaatagtaacatggtagccacataaatatgatcaactatagattataagggttggcttttggtgtttgagaggtt |
100 |
Q |
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| T |
6706566 |
catgatgaacaaagagaagacttattaatagtaacatggtagccacataaatatgatcaactatagattataagggttggcttttggtgtttgagaggtt |
6706665 |
T |
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| Q |
101 |
cctttaattcttgcaaatctcactttctattaattctctttgtttggaagtttgtggggtaaactatttgcag |
173 |
Q |
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| T |
6706666 |
cctttaattcttgcaaatctcactttctattaattctctttgtttggaagtttgtggggtaaactatttgcag |
6706738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 319 - 449
Target Start/End: Original strand, 6706880 - 6707010
Alignment:
| Q |
319 |
ctaagaatttatgttgttaatagtgannnnnnnaatacatttcttaagcttgcaaaaatgaatatgttattcaacaatattttcttactcaaagttgata |
418 |
Q |
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| T |
6706880 |
ctaagaatttatgttgccaatagtgatttttttaatacatttcttaagcttgaaaaaatgaatatgttattgaacaatattttcttactcaaagttgata |
6706979 |
T |
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| Q |
419 |
gtgccaaagttaacttccaagtacgtaattt |
449 |
Q |
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| T |
6706980 |
gtgccaaagttaacttctaagtacgtaattt |
6707010 |
T |
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