View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_high_6 (Length: 352)
Name: NF19869_high_6
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10724110 - 10724335
Alignment:
| Q |
1 |
ttattttatctgatttcaatcgataattcaacctattctttccctaaaaaataatcaactcattctaaaattttaaaatatatagcatatacagctaaaa |
100 |
Q |
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| T |
10724110 |
ttattttatctgatttcaatctaaaattcaacttattctttccctaaaaaataatcaactcattctaaaattttaaaatatatagcatatacagctaaaa |
10724209 |
T |
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| Q |
101 |
accaaatttaaaatttattac-nnnnnnnaatagacaaaatttgttacttaaatctaataaaataaaggatttgactcggctgatagacttattaaatca |
199 |
Q |
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| T |
10724210 |
accaaatttaaaatttattacttttttttaatagacaaaatttgttacttaaatctaataaaataaaggatttgactcggctgatagacttattaaatca |
10724309 |
T |
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| Q |
200 |
tgatcaaatacatgtacataatacat |
225 |
Q |
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| T |
10724310 |
tgatcaaatacatgtacataatacat |
10724335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 10724403 - 10724445
Alignment:
| Q |
293 |
ccaattttatagaattacttcaaaagatttcatttacaaatat |
335 |
Q |
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| T |
10724403 |
ccaattttatagaattacttcaaaagatttcatttacaaatat |
10724445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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