View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_low_12 (Length: 325)
Name: NF19869_low_12
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 40942238 - 40941946
Alignment:
| Q |
21 |
gtccttccacaagcaatgatctaaattaccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctat |
120 |
Q |
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| T |
40942238 |
gtccttccacaagcaatgatctaaattaccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctat |
40942139 |
T |
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| Q |
121 |
gtggatcaaagggctcatttgtagggtcaaatttttctacaccaaactttttaagtgcctgtaaatataagcagtaccttcaaaacaatagcctgaagca |
220 |
Q |
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| T |
40942138 |
gtggatcaaagggctcatttgtagggtcaaatttttctacaccaaactttttaagtgcctgtaaatataagcattaccttcaaaacaatagcctgaagca |
40942039 |
T |
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| Q |
221 |
atatattgtccccagagtttcatttttaagcacatgatgtgatgatgatatattttgaaataatttcataagattataactttgaaacatatt |
313 |
Q |
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| T |
40942038 |
atatattgtccccagagtttcatttttaagcacatgatgtgatgatgatatattttgaaataatttcataagattataactttgaaacatatt |
40941946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 21507227 - 21507090
Alignment:
| Q |
47 |
taccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctatgtggatcaaagggctcatttgtaggg |
146 |
Q |
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|||||| || ||| || ||||||||||||| ||||||||| | || || | || ||||| || |||||||| | ||||||||| || ||||||||||| |
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| T |
21507227 |
taccttgagaacaactccaacagtgcctggaggcttggaagcatcgggtatttggaagatggcattatgcctgtttggatcaaatggttcatttgtagga |
21507128 |
T |
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| Q |
147 |
tcaaatttttctacaccaaactttttaagtgcctgtaa |
184 |
Q |
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| T |
21507127 |
tcatatttttcaacaccgtgctttttaagtacctgtaa |
21507090 |
T |
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