View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19869_low_13 (Length: 284)
Name: NF19869_low_13
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 35031514 - 35031247
Alignment:
| Q |
13 |
tttagatttaaatctgattgcatgttttcggtctacaaatttgtgttgtcgattgaactagattttacatacaaatacacttaaatgatgtaacaaagta |
112 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35031514 |
tttagatttgaatctgattgtatgttttcggtctacaaatctgtgttgtcgattgaactagattttacatacaaatacacttaaatgatgtaacaaagta |
35031415 |
T |
|
| Q |
113 |
gaagattgttggaggtcggcaaggtgagacaaatacacag-nnnnnnnnaaataaatgagacaagtacatgtattagtatagtttaccaaaactaagcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35031414 |
gaagattgttggaggtcggcaaggtgagacaaatacacagtttttttttaaataaatgagacaagtacatgtattagtatag-ttaccaaaactaagcat |
35031316 |
T |
|
| Q |
212 |
gtgatgtgatggtattacg---------aaatccacatttttacattcataaagaaaaatccaaataaa |
271 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35031315 |
gtgatgtgatggtattacgaaggtagccaaatccacatttttacattcataaagaaaaatccaaataaa |
35031247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 36857001 - 36857038
Alignment:
| Q |
195 |
ttaccaaaactaagcatgtgatgtgatggtattacgaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36857001 |
ttaccaaaactaagcatgtgatgtgatggtattacgaa |
36857038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 36857067 - 36857104
Alignment:
| Q |
231 |
aaatccacatttttacattcataaagaaaaatccaaat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36857067 |
aaatccacatttttacattcataaagaaaaatccaaat |
36857104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University